Last updated on 2024-05-17 05:56:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 11.92 | 127.40 | 139.32 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 9.89 | 102.12 | 112.01 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 178.30 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 227.37 | NOTE | |||
| r-devel-windows-x86_64 | 2.0.0 | 10.00 | 117.00 | 127.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 8.62 | 126.43 | 135.05 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 7.54 | 126.27 | 133.81 | OK | |
| r-release-macos-arm64 | 2.0.0 | 62.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 106.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 10.00 | 114.00 | 124.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 60.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 133.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 14.00 | 141.00 | 155.00 | OK |
Version: 2.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(demic)
>
> test_check("demic")
$all_ptr
est_ptr coefficient pValue cor correctY
Akk0_001 1.946931 0.3840328 7.840437e-25 0.9970041 3.260867
Akk1_001 2.763177 0.5858478 1.476701e-26 0.9979485 3.321042
Akk2_001 3.449088 0.7136534 5.229909e-31 0.9992274 3.361187
$contigs_ptr
est_ptr coefficient pValue cor correctY
Akk0_001 1.821267 0.3906374 6.887577e-14 0.9969686 3.223508
Akk1_001 2.478792 0.5865790 2.094852e-13 0.9973051 3.273919
Akk2_001 3.011576 0.7093704 4.084904e-16 0.9989046 3.294940
$samples_ptr
NULL
est_ptr coefficient pValue cor correctY
Bfrag0_002 2.061760 0.3699599 1.470163e-36 0.9918912 2.216383
Bfrag1_002 3.043483 0.5690839 3.576654e-49 0.9981767 2.222179
Bfrag2_002 4.204818 0.7343522 1.049070e-51 0.9986483 2.208119
est_ptr coefficient pValue cor correctY
Ecoli0_003 1.988107 0.3700784 6.448795e-30 0.9841452 2.307350
Ecoli1_003 2.862107 0.5663652 1.064226e-39 0.9945696 2.217167
Ecoli2_003 3.924374 0.7363595 1.014636e-42 0.9960009 2.152480
$all_ptr
est_ptr coefficient pValue cor correctY
Sample1 1.577167 0.3978371 8.111920e-37 0.7637339 1.481230
Sample2 2.354320 0.7476431 1.453821e-88 0.9410749 1.588319
Sample3 1.838580 0.5317476 1.621567e-46 0.8202775 1.417947
$contigs_ptr
est_ptr coefficient pValue cor correctY
Sample1 1.565208 0.4087631 5.071977e-23 0.7686065 1.473620
Sample2 2.283650 0.7515877 3.600540e-52 0.9439307 1.568547
Sample3 1.759339 0.5153743 1.877086e-30 0.8171428 1.381079
$samples_ptr
NULL
$all_ptr
est_ptr coefficient pValue cor correctY
Sample1 2.281308 0.6319368 5.251404e-62 0.9775760 0.3235725
Sample2 1.748664 0.4282018 4.980528e-39 0.9244302 0.3799434
Sample3 2.323527 0.6459869 1.588855e-64 0.9803428 0.3075130
$contigs_ptr
est_ptr coefficient pValue cor correctY
Sample1 1.990273 0.6390735 1.375824e-34 0.9730710 0.4114570
Sample2 1.576397 0.4119713 9.805040e-18 0.8986995 0.4206202
Sample3 2.020443 0.6481677 1.932803e-37 0.9773193 0.4103703
$samples_ptr
NULL
structure(list(`(Intercept)` = c(0.122133753095513, 0.112468233560288,
0.0372788404325122, 0.177304339887256, 0.0270507610681736, 0.0842232868459067,
0.106812647682803, 0.162034499737329, 0.14194349045613, 0.138951868657145
), GC_content = c(-0.139377848208212, -0.139377848208212, -0.139377848208212,
-0.139377848208212, -0.139377848208212, -0.139377848208212, -0.139377848208212,
-0.139377848208212, -0.139377848208212, -0.139377848208212),
s_c = c("a:1", "a:2", "b:3", "b:4", "c:5", "c:6", "d:7",
"d:8", "e:9", "e:10")), row.names = c("a:1", "a:2", "b:3",
"b:4", "c:5", "c:6", "d:7", "d:8", "e:9", "e:10"), class = "data.frame")
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 42 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-est_ptr.R:48:3'): DEMIC main function produces correct output on sourceforge data cluster 2 ──
O$contigs_ptr (`actual`) not equal to `EO2` (`expected`).
actual vs expected
correctY
- actual[1, ] 0.4114570
+ expected[1, ] 0.3099378
- actual[2, ] 0.4206202
+ expected[2, ] 0.3779174
- actual[3, ] 0.4103703
+ expected[3, ] 0.3044411
`actual$correctY`: 0.4 0.4 0.4
`expected$correctY`: 0.3 0.4 0.3
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 42 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘Matrix’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc