Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis,
differential abundance analysis, community assembly analysis, visualization of
phylogenetic tree, and functional enrichment analysis. With a progressive
approach, the package offers a range of analysis methods to explore and understand
the complex communities. It is designed to support researchers and practitioners
in conducting in-depth and professional omics data analysis.
| Version: |
0.1.1 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
pcutils (≥ 0.2.5), dplyr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, ggnewscale, ade4, scales |
| Suggests: |
picante, ggpmisc, NST, permute, aplot, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, jsonlite, prettydoc, clipr, zetadiv, ggforce, readxl |
| Published: |
2024-04-10 |
| Author: |
Chen Peng  [aut,
cre] |
| Maintainer: |
Chen Peng <pengchen2001 at zju.edu.cn> |
| BugReports: |
https://github.com/Asa12138/pctax/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/Asa12138/pctax |
| NeedsCompilation: |
no |
| Citation: |
pctax citation info |
| Materials: |
README NEWS |
| CRAN checks: |
pctax results |