# Nested Data Summary, Adverse Events and REDCap

## Documentation for package ‘BiostatsUHNplus’ version 1.0.3

- DESCRIPTION file.
- Package NEWS.

## Help Pages

ae | Simulated adverse events for patients receiving two study agents.
ae_timeline_plot | Outputs related adverse event timeline plots including just system organ class (AE category), or system organ class and lowest level term (AE detail). This function can fit up to 5 different attributions. Modify width, height and scale parameters in ggsave() to customize fit for large plot.
as_numeric_parse | Modification of the as.numeric function that prints entries that fail to parse as a message
caterpillar_plot | Caterpillar plot. Useful for plotting random effects from hierarchical models, such as MCMCglmm::MCMCglmm() object, that have binary outcome.
covsum_nested | Nested version of reportRmd covsum()
demography | Simulated demography for patients.
drug1_admin | Simulated study agent 1 for patients.
drug2_admin | Simulated study agent 2 for patients.
dsmb_ccru | Outputs the three DSMB-CCRU AE summary tables in Excel format per UHN template
dsmb_ddp | Outputs the DSMB-DDP AE summary tables in Excel format per UHN template
enrollment | Enrollment data Simulated enrollment for patients.
ineligibility | Simulated ineligibility for patients.
nice_mcmcglmm | Nice table of model output from MCMCglmm::MCMCglmm()
nice_mcmcglmm_icc | Nice table of intraclass correlation coefficients from MCMCglmm::MCMCglmm() model output
redcap_data_out | Combines exported REDCap raw and label .csv files together with data dictionary. Tranforms the exported data into Excel sheets by survey instrument with one row per participant
rm_ae_all_g3p | Outputs R Markdown table of all and grade 3+ adverse events by comparison group
rm_covsum_nested | Outputs a nested version of reportRmd::rm_covsum()