# Generated by roxygen2: do not edit by hand

export(add_depths_to_ref)
export(call_mutations)
export(create_ref)
export(estimate_lineages)
export(explore_mutations)
export(get_codons)
export(id_indels)
export(id_snps)
export(vcf_to_mixvir)
importFrom(magrittr,"%>%")
importFrom(stats, "median")
importFrom(utils, "write.table")