Package: MultIS
Type: Package
Title: Reconstruction of Clones from Integration Site Readouts and
        Visualization
Version: 0.6.2
Date: 2021-08-06
Authors@R: 
    c(person(given = "Sebastian",
             family = "Wagner",
             email = "sebastian.wagner3@tu-dresden.de",
             role = c("cre", "aut"),
             comment = c(ORCID = "0000-0001-6468-4833")),
      person(given = "Christoph",
             family = "Baldow",
             email = "christoph.baldow@tu-dresden.de",
             role = c("aut"),
             comment = c(ORCID = "0000-0002-4366-1453")),
      person(given = "Ingmar",
             family = "Glauche",
             email = "ingmar.glauche@tu-dresden.de",
             role = c("ths"),
             comment = c(ORCID = "0000-0002-2524-1199")))
Author: Sebastian Wagner [cre, aut] (<https://orcid.org/0000-0001-6468-4833>),
  Christoph Baldow [aut] (<https://orcid.org/0000-0002-4366-1453>),
  Ingmar Glauche [ths] (<https://orcid.org/0000-0002-2524-1199>)
Maintainer: Sebastian Wagner <sebastian.wagner3@tu-dresden.de>
Description: Tools necessary to reconstruct clonal affiliations from
    temporally and/or spatially separated measurements of viral
    integration sites. For this means it utilizes correlations present
    in the relative readouts of the integration sites. Furthermore,
    facilities for filtering of the data and visualization of different
    steps in the pipeline are provided with the package.
License: LGPL
Imports: clValid, cluster, clv, dplyr, foreach, ggplot2, igraph, ltm,
        plyr, poweRlaw, reshape2, RColorBrewer, rlang, rmutil
Suggests: knitr, markdown, mclust, testthat, gridExtra
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2021-08-06 10:36:57 UTC; wagnese
Repository: CRAN
Date/Publication: 2021-08-06 11:10:02 UTC
Built: R 4.4.3; ; 2025-11-26 04:08:27 UTC; windows
