# Generated by roxygen2: do not edit by hand

export(correlatedBgEffects)
export(expGen2probGen)
export(geneticBgEffects)
export(geneticFixedEffects)
export(getAlleleFrequencies)
export(getCausalSNPs)
export(getKinship)
export(noiseBgEffects)
export(noiseFixedEffects)
export(probGen2expGen)
export(readStandardGenotypes)
export(rescaleVariance)
export(runSimulation)
export(savePheno)
export(setModel)
export(simulateDist)
export(simulateGenotypes)
export(simulatePhenotypes)
export(standardiseGenotypes)
export(transformNonlinear)
export(writeStandardOutput)
import(ggplot2)
import(snpStats)
importClassesFrom(snpStats,SnpMatrix)
importFrom(R.utils,countLines)
importFrom(Rcpp,sourceCpp)
importFrom(cowplot,plot_grid)
importFrom(dplyr,filter)
importFrom(methods,as)
importFrom(methods,getPackageName)
importFrom(optparse,OptionParser)
importFrom(optparse,make_option)
importFrom(optparse,parse_args)
importFrom(reshape2,melt)
importFrom(snpStats,write.plink)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pnorm)
importFrom(stats,rbinom)
importFrom(stats,rexp)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,read.table)
importFrom(utils,write.table)
useDynLib(PhenotypeSimulator, .registration = TRUE)
