b5d9c2b8647c8c20b6bbeb5a433957fd *DESCRIPTION
dec196abb996f9e4c3e4b208ee125d5e *NAMESPACE
2cd3967f603820d23913dceee19dde44 *NEWS
cd6b46d53ab1e4df1a307bb49c170c10 *R/BayesianSetupGenerateParallel.R
016bf1534ffcd6b3015a3a53f38de514 *R/BayesianTools.R
3f52c251620a49b6a06a773c66c0730b *R/DIC.R
def5a629d06a4a9cb8e91bcb593788a5 *R/GOF.R
a1bc91352abd6f43d09976461d1bdfcc *R/MAP.R
f4bec8a36debce518bb438ea237958dc *R/RcppExports.R
7a2705914deb3d7c8d61d03d7fd5b872 *R/SMC.R
3f3e99557a139bff5f7a29a99b08f88f *R/VSEM.R
73d47f9e382e7329a1db7182866951ad *R/WAIC.R
328faa944bd1ffe114f8a3448e7cfc66 *R/benchmark.R
c68d259ef0d208be9017b62a3f0a7e94 *R/blockUpdate.R
b5b1889b0c6d53bc5113cd6ffb81d7dc *R/classBayesianOutput.R
c7ba59871d7f2a99c04a68cc83cd55bf *R/classBayesianSetup.R
85e3da47ce2c05fcddc4a1e530f98fc9 *R/classLikelihood.R
d24a8baa06cd63e3cc167c91b21460cf *R/classMcmcSampler.R
8150cbf662c7e69e288d381f7af20b9a *R/classMcmcSamplerList.R
3a8bfc66daec1f7f06ec53f9ea48ea7a *R/classPosterior.R
ffa1203b6de0a6e41906626414a55143 *R/classPrior.R
b7180a864990a827591f7022b76eb889 *R/classSMCSamplerList.R
69aaa0a7f72992bfc8c2e3188938eee4 *R/classSmcSampler.R
2318c96e05266c13d4f9ffe37ea36db4 *R/codaFunctions.R
58542cb5c4f698f77b92c80bcd9942c3 *R/convertCoda.R
0a5cd7f14168b5c5d8db38c5f7516cd8 *R/diagnosticsGelman.R
7219b1e82611d2889b8ca05d6af03400 *R/getVolume.R
530020a76fdaaa8b65f386ec64ba61f8 *R/importPackages.R
fd18292d9d9c375bf34115a8f40de349 *R/marginalLikelihood.R
07de8f7da74d70e946590904ce65eb79 *R/mcmcConfidence.R
b092586e793bc4c62f4c900c7ef95d37 *R/mcmcDE.R
baf2a64e7ca83a0ec04902f7ca333281 *R/mcmcDEzs.R
163c38abde752282c7e22127d0d893fe *R/mcmcDREAM.R
25fc1f7a0ce95709c17f1400cc3227a9 *R/mcmcDREAM_helperFunctions.R
c59a7abcc506462f95e970c4dee1fe2d *R/mcmcDREAMzs.R
3433bdd6e2eb42465e9adaa03c949341 *R/mcmcFrancesco.R
a2e7bfec77196cc76d25ea4791f8a1fa *R/mcmcMetropolis.R
bc754d68cd478fcf5ae3d4c0a72d6a95 *R/mcmcMultipleChains.R
87f196cb3a7510e0c5c0f5aed1449bf5 *R/mcmcRun.R
a9fdcf7c313d9ac7228564dfb0d04dac *R/mcmcSamplerAutomatic.R
e8479f00cb97334e69952d8b39d25df8 *R/mcmcTwalk.R
ae52ca82df611d10dde8c59b26ba8557 *R/mcmcTwalk_helperFunctions.R
eff05d03df4180f1a1bd11dc8fa7ec52 *R/plotCorrelationDensity.r
b54588dae08cc7f1ab0b8f45b0453f09 *R/plotDiagnostic.R
4a5d56b941b39d2489f64a7f59732655 *R/plotMarginals.R
66f5e47667e8efdb935d8d39fc6048fc *R/plotSensitivityOAT.R
f1597ec855e1b9257b5c7dd3ecd0be17 *R/plotTimeSeries.R
d5b1a97f29595eca3d2cc04ffe2d09d2 *R/plotTrace.R
9114cf52e483a434d0de2b56de40f97f *R/proposalGenerator.R
049a9bc08ea74b675d42f3c25d2d204a *R/testFunctions.R
475ad5641b1c313f87ec10c6f3723cd7 *R/utils-Numerics.R
d779f7910992a2cf95bcb95740f83328 *R/utils.R
a62a02f5c4283a57254f13ba362e9cd9 *R/utilsFrancesco.R
f70143f93e734cf690100483e26d296d *build/vignette.rds
3431d265d421bfe949a9ae29a1e176af *inst/doc/BayesianTools.R
7ee69dadd830b42226611edce676758b *inst/doc/BayesianTools.Rmd
d0b5ac6153be9114b548cd8a5ead8361 *inst/doc/BayesianTools.html
8f94d0c2b38b3f13f6b0f86d2acaf039 *inst/examples/GOF.R
13adc551e6582b2c6e436eb3959a359f *inst/examples/MetropolisHelp.R
86d50304c3733b90bf93935991d6dd14 *inst/examples/SMCHelp.R
0465389ed7ffa8bcc499640c60db23b7 *inst/examples/VSEMHelp.R
4979d8a7177d40babd9263337a35a1e9 *inst/examples/WAICHelp.R
c8235f79d03b057db64bbfb3ccdb887d *inst/examples/bridgesampleHelp.R
12a7196c54e65fb4e7304c88d3aa6098 *inst/examples/classBayesianSetup.R
39d0b2b270f2fc12dd03ea55ee9024eb *inst/examples/correlationPlotHelp.R
bc8641aefd94455f6252cb298237a612 *inst/examples/createPrior.R
aa59fac33bcd9e4f12ca47f1c531fd16 *inst/examples/createPriorDensity.R
2cabcd14dca2d8f198c6eae001d65788 *inst/examples/createTruncatedNormalPrior.R
422fcf4f72b0f4e9f8668570f088344f *inst/examples/createUniformPriorHelp.R
51767c60dac90c6a3c85ee5591323a68 *inst/examples/generateParallelExecuter.R
1c9eefd2ad46f0a789e46c71b24e8b50 *inst/examples/generateTestDensityMultiNormalHelp.R
4e6917d6f2260da1a9b6fb6bc8467e81 *inst/examples/getSampleHelp.R
e092a4e635bceefedad0308e4ad803bf *inst/examples/getVolume.R
5c0d8b46887631a2d479e5c377c65a5c *inst/examples/marginalLikelihoodHelp.R
37df78d8a0a858d8d3ce59ec6a012bb8 *inst/examples/marginalPlotHelp.R
22d538a66ae127b12666cb539797d568 *inst/examples/mcmcRun.R
261962e7c6df83518ae5a6ee722ac907 *inst/examples/plotDiagnosticHelp.R
d0644107b254b9f422686b9fb587b614 *inst/examples/plotTimeSeriesHelp.R
c7d471e78e7b8f73b905a73e989f262d *inst/examples/plotTimeSeriesResultsHelp.R
79ba8ff7ff7992cac5f973ddd44f6f2a *inst/examples/proposalGeneratorHelp.R
5f990040545862eb5559b331b9504026 *inst/examples/testLinearModel.R
e55210e46ad691d46ceb44f3fd3a0d76 *inst/examples/tracePlotHelp.R
9dd785fb0b1bac5b1ad0c9b93c12952b *man/AM.Rd
a06446594b7a59a7ace1fbf5302b9644 *man/AdaptpCR.Rd
068a6b7cf912cc55046311178b8feda6 *man/BayesianTools.Rd
1b55400193996e1d3281a1699220d702 *man/DE.Rd
98447cd1abe1971f335ee00c684426e3 *man/DEzs.Rd
52cf6e0ba880d11955071acd760a0f4f *man/DIC.Rd
8dfe22a73e447b4b69a68003cc5fd53d *man/DR.Rd
a5fe4450adc21f29bdf470a6216976a5 *man/DRAM.Rd
e227f746bf682419d24bedf5440c9dac *man/DREAM.Rd
adf685c18d1bfd890c1e4a54bf99c371 *man/DREAMzs.Rd
a439b206ee9206026bd541ae79d515d1 *man/GOF.Rd
ee0f6ba0e9db4bf3461263cde984cc85 *man/Gfun.Rd
ec84dad2f5d4046ab8421e4f02e51f5e *man/M.Rd
27c837e0e0890bac6225d60edab1c415 *man/MAP.Rd
b70e4bcd5bc08558ca3b26bd4340d6c9 *man/Metropolis.Rd
5cbeab0dbef4cf2eb9c1a441b3109364 *man/Twalk.Rd
394e1dd34f4f61aaf1752b4b71914236 *man/TwalkMove.Rd
518372fda1c2a203a2fe894be6bcb57d *man/Twalksteps.Rd
7947976f7ea74042ef7121818f6c5d08 *man/VSEM.Rd
8ebf4bb9e24162c80a189d7784c2ee02 *man/VSEMcreateLikelihood.Rd
9a9fa0d797ba06655792e7ff015fc54c *man/VSEMcreatePAR.Rd
d10dae2cb5196cf8a72ca6bd01383c8e *man/VSEMgetDefaults.Rd
7f9d95caa093215ae8cb78bee9ccbafd *man/WAIC.Rd
51c957ce22eba9ab591afbbc9c998eee *man/applySettingsDefault.Rd
3108a779dc2059781ea5b7a48c6b044a *man/betaFun.Rd
d23d6f0fdf9dd0751b59147b7f42d2b6 *man/bridgesample.Rd
27e078d34cd48c89233f3bec267ebf6a *man/checkBayesianSetup.Rd
39704332c8eb40845b5c220c2fcf37f1 *man/combineChains.Rd
f4f4d78f4bd63867f4575bc901809d48 *man/convertCoda.Rd
04bb20e32a221c731a0f8dfae4ba729b *man/correctThin.Rd
b4f0e603d61ae4013f988194d105c37b *man/correlationPlot.Rd
3f2026a3cff0140340dc9ab95a98ec27 *man/createBayesianSetup.Rd
ee532a290bc665f56158f464ef855e4a *man/createBetaPrior.Rd
802036137e9ef04baea1ae021994c586 *man/createLikelihood.Rd
7bcc948a5a4ee7237f2dd150ba597465 *man/createMcmcSamplerList.Rd
1872642cd3708535422384b5c06ef1ff *man/createPosterior.Rd
b232bb46eb3abdb254b023f3de30e3e4 *man/createPrior.Rd
9c2a1999ec2b006bb5b9d0e625ed002f *man/createPriorDensity.Rd
4fb22bf1e1716a8f9d6ad656da11028d *man/createProposalGenerator.Rd
bb42486ea9df67cece261163fb269525 *man/createSmcSamplerList.Rd
9e2cb8e6a21bbe8c5db537b56a24cb6d *man/createTruncatedNormalPrior.Rd
2ae75d10a2fe98efa71592f94c41d1f6 *man/createUniformPrior.Rd
a6a3b4bdceb5f7ff6363ea75cef7ffee *man/factorMatrice.Rd
7451c4de3f40449002ff110a1ccedcea *man/gelmanDiagnostics.Rd
7284fb16d4648459addec3e16a1c09f6 *man/generateCRvalues.Rd
ce1ebd8a92524108684e24ae76c7bb9a *man/generateParallelExecuter.Rd
2199c9a707f3c6c29970ea7506b2a6f6 *man/generateTestDensityMultiNormal.Rd
28e90b7378834afa903fe394edf9a8a0 *man/getBlock.Rd
554323df110bfa77e6aa2b080dac7109 *man/getBlockSettings.Rd
471094a673013e3f636f58345472fb3a *man/getCredibleIntervals.Rd
d13ff0cf8737972938cb3cbfcbc6472a *man/getDharmaResiduals.Rd
dc5e7fbb044f03458e6abc5712bf2e01 *man/getMetropolisDefaultSettings.Rd
2dfb6c6a85ea290d4b79f9d2c0ef6c99 *man/getPanels.Rd
386824765806e15f72d3ade1dc731b2b *man/getPossibleSamplerTypes.Rd
1268f44b85bd27b7a44d0f1e77609aeb *man/getPredictiveDistribution.Rd
3cfb793bcd2599e48da063888085ef25 *man/getPredictiveIntervals.Rd
8a783a4b9fbbbc9e404a1da66144a1e8 *man/getRmvnorm.Rd
6e580c37ad8e4064571d67201859fc27 *man/getSample.Rd
d8227e2210e27426ea8486f0b420bc15 *man/getSetup.Rd
4a799e2bc87ea9aa3c717c0ff3d210fa *man/getVolume.Rd
67a8bb9f014d6b829350c7cc286c720c *man/likelihoodAR1.Rd
181eadc183708d66065f240443b82a30 *man/likelihoodIidNormal.Rd
09cd4c59a04d0df3f98940f5ac40e179 *man/logSumExp.Rd
8a62e7de874f1f408d1c9af2c2e6311b *man/makeObjectClassCodaMCMC.Rd
a89ae925e3e7a924f67b51dcbab8bba1 *man/marginalLikelihood.Rd
0d77f3157f0369e518561a912bd4f3c1 *man/marginalPlot.Rd
3213bf00d682bf6a4fa246238a4ad0dc *man/marginalPlotDensity.Rd
3a12a63b9ca9f900d23110dcc425d1df *man/marginalPlotViolin.Rd
ff780282e83ab470312214ae0910ba6d *man/mcmcMultipleChains.Rd
0b98d6c4ea72b1c26949e226a350e553 *man/metropolisRatio.Rd
980b70d6cac43ac34a06ae85d8bf0123 *man/package-deprecated.Rd
c912478b168ba460133d9c8016a74289 *man/plotDiagnostic.Rd
06d469729a5c8995fe5999d8b5acf40a *man/plotSensitivity.Rd
62a570fd7fef8ee90ca22e97a396c07f *man/plotTimeSeries.Rd
aba0b0347204155483cbce73a18eade0 *man/plotTimeSeriesResiduals.Rd
1d113a819e8b70c66f22aeb99e4ae2e8 *man/plotTimeSeriesResults.Rd
b07432290dd5ddb4bac5f66b2be26e0c *man/propFun.Rd
d06ebb89f1343ae85d685d1f47041812 *man/rescale.Rd
0a89dac0e9ef0bb30298b3fd8407e994 *man/runMCMC.Rd
9c48273e85a9dd23309509806d582016 *man/sampleEquallySpaced.Rd
c8e89ab10af188ffc27d793804f43f6f *man/sampleMetropolis.Rd
ca06760898097fa20bdbb986eefd8f2d *man/scaleMatrix.Rd
0d487677ce755f648e4f1cd04d510971 *man/setupStartProposal.Rd
a8848ac149099291f3ec9237814e52c8 *man/smcSampler.Rd
ecc9237e4dfa59efb0c161bc86c9235d *man/stopParallel.Rd
3d4fae7b139915e64f7282907454c2cc *man/sumSquare.Rd
4baf5d96622abf9d4b1a08ddb29b32c4 *man/testDensityBanana.Rd
ef7b2506aa1a13107a9b3cdb6a47de99 *man/testDensityInfinity.Rd
42633500f9dfda6414ab71efa06220c2 *man/testDensityMultiNormal.Rd
9c11d4b3c05e5eff1526bd62b20585d3 *man/testDensityNormal.Rd
9cc00253afa5cdbef981073794b4b8fc *man/testLinearModel.Rd
3018f1500bc4d153f2cf400e47b697ac *man/thinMatrix.Rd
0d7c4f03d9fe6b3cd8a90bd6e4459f00 *man/tracePlot.Rd
4813601c409da9721b9c7627be1466a2 *man/updateGroups.Rd
29f8f9dec46fcc72e81a04c0fa112dca *man/updateProposalGenerator.Rd
58f6a7f54104b2060d7a7b7eed89e59c *man/vsemC.Rd
2e84c55ca90bac59caa958b75b98a38d *src/RcppExports.cpp
4b303d2b38a0db4babed431d5bb40570 *src/init.c
0308b0ffd57604672457603f8ded21e3 *src/vsem.cpp
dd2242ef3b4b841e6fc68c2013f5b9bb *tests/testthat.R
179a97420c7fb11465c1a73a5bab83d5 *tests/testthat/test-convergence.R
283721b80df48bccecc47e96ec9d9456 *tests/testthat/test-correlationPlot.R
cb1637a1d3b7a61bef210792beec235f *tests/testthat/test-createBayesianSetup.R
761965401bb656027cdbf3c9fdbfe3b9 *tests/testthat/test-infinity.R
280250eda1c1aa9dd6b028283ded1dc4 *tests/testthat/test-marginalLikelihood.R
c29d72cc5d7f0a0cb8f32d9702b032d1 *tests/testthat/test-marginalPlot.R
e48980539aeb3230f175c2116351a8bc *tests/testthat/test-plotDiagnostic.R
c0c59b99d51e2284077879375c9d69cf *tests/testthat/test-plotTimeSeriesResults.R
58d6a82a47d8978a0259116ba12682c9 *tests/testthat/test-samplers.R
b13edb4f9f245ddbdaae7207355ee3c8 *tests/testthat/test-settingsDefault.R
6755967b9aeac200b01c4a74765c85f0 *tests/testthat/test-startValues.R
a33009cba7f71929661e8904d123421d *tests/testthat/test-tracePlot.R
e86671ea29af241b7ccfe229fcde45c6 *tests/testthat/test-utilities.R
b15d23eab471bb04f63d0c1168585fa7 *tests/testthat/test-workflow.R
7ee69dadd830b42226611edce676758b *vignettes/BayesianTools.Rmd
