7007cc59ddc5c1df8d99b61c2cc20bcd *DESCRIPTION
1580c9622cf3b25836caba3dec04262a *NAMESPACE
e385a7de9f1766b098cc1ab8dcaebe8a *R/brundle-data.R
7ae0835f11011495a83e7b4a71c01b00 *R/brundle.R
b36b46668f7159a2b69e7ea9722ca1c9 *README.md
76e2483bee976d0402dfc3080cc7e1b6 *data/dbaControl.rda
3f408d34c73f4d3be7a0cc7c27f3bf1b *data/dbaExperiment.rda
f44237421308c1afbf8bf47c4ca5ae40 *data/jg.conditions.rda
734315df2ebd659bddf85032ac9e0a95 *data/jg.controlCountsTreated.rda
0c18c5054494fb4b212a642386413fd7 *data/jg.controlCountsUntreated.rda
aa9bc7ac9b78473f4b33af0e9f3e8246 *data/jg.controlPeakset.rda
1a83cf0d13da4036aa1982a21a26cfc7 *data/jg.controlPeaksetDeSeq.rda
e5e1d5946671c6e91945deb4be04a443 *data/jg.controlResultsDeseq.rda
8584aa48e38c34181711a7c7247f0ccf *data/jg.experimentPeakset.rda
78ef877e5fc865533f66fe232a2ce671 *data/jg.experimentResultsDeseq.rda
37cdede7b2c65c0dacf6a26ff6432ef9 *inst/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
8979c16871994f80bebef27b9bd63ff0 *inst/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
86a53319fe4b3b36a1c1e2f569ad6b4c *man/Brundle.Rd
80308ac0c16d92737b08e2ef8062b646 *man/dbaControl.Rd
33ae928c95fbea8a162207e1d75fb729 *man/dbaExperiment.Rd
fd3fffa3f07f28d23a127422c71e7223 *man/jg.applyNormalisation.Rd
4e9b9046a88092b496989ac012c42119 *man/jg.conditions.Rd
6de2e93e1f66bd4b8186d2e77db91dcd *man/jg.controlCountsTreated.Rd
b756187ec576bf31349aa54e2201bf69 *man/jg.controlCountsUntreated.Rd
46821720c2b973af76171ce9841f5d9e *man/jg.controlPeaks.Rd
1e777ddd4bd67b4dc59887ea1c08c426 *man/jg.controlPeakset.Rd
d519443767595e179126d4eeb42f199b *man/jg.controlPeaksetDeSeq.Rd
ef61a79c831cf1357de2ad392cafca46 *man/jg.controlResultsDeseq.Rd
b087078d3f46f3507716b0e4c09c86fd *man/jg.convertPeakset.Rd
bf8346577d9bd5e4627e562b49ee9b69 *man/jg.correctDBASizeFactors.Rd
a7f2c7393caa3460434ef3394c98d5cd *man/jg.countAlignedMReads.Rd
6bdb094d17a1932f0999b2679166f856 *man/jg.dbaGetPeakset.Rd
83f829a2fedcd6433bcc79f4cf8e0cad *man/jg.experimentPeakset.Rd
c9def0a2e11cac28b10b0f072ed55ff6 *man/jg.experimentResultsDeseq.Rd
91854db78227393d9c313d7e2b17a1b6 *man/jg.getControlCounts.Rd
e93afc5267546619b542df4a363a3365 *man/jg.getCorrectionFactor.Rd
05e57364e0646510c05198f6efb5dab1 *man/jg.getDba.Rd
29fb7a7e0c4ee3069d79871ec66f5e11 *man/jg.getNormalizationCoefficient.Rd
5ce73552142512995f1a541e3850c20f *man/jg.getSampleIds.Rd
1928e89133b75c97bdcb90507ce2a692 *man/jg.plotDeSeq.Rd
243e3e8969e43faac8a3f67b1e1dd94a *man/jg.plotDeSeqCombined.Rd
e42c7b93cd8d6830629e1ff116ffc6e3 *man/jg.plotMA.Rd
5f3af27d92060ef1699eff5a1942b628 *man/jg.plotNormalization.Rd
e562aa87df29721c61bddc87629d42d6 *man/jg.runDeSeq.Rd
