1860e461a8c8a9e4f82b2a0b73cd0141 *DESCRIPTION
69dc7c59d043941fa81c495b4ac522e5 *NAMESPACE
5412b0aaa72026244a7869b7e9f0e182 *NEWS.md
bf34a8911afd8f23b7779fc54759f52b *R/Metrics.R
fd23bf3fb9d4d1e6e997a1df9321364c *R/PartitionDistance.R
4a0f18911d15696dd82834c5db8fa8a3 *R/QuartetDistance.R
12bb0946a76873fe3713aac5d37b3ebe *R/RcppExports.R
aec6f760ac0c72c0a1e81c49ee5502cf *R/ResolvedQuartets.R
7545dc145a0eed630dd033f80e2ef3ac *R/TernaryPoints.R
b01a57dd51f587fc4039da74afc77bb9 *R/data.R
e79a11c7cb6e1054c3b5b9f7fc0db431 *R/tqDist.r
b390496bd8a20c9de1cec115537854f2 *R/zzz.R
620489fcffcc568816c6da2e37ddbd5f *README.md
543eb6606b72b61220bf34fcba63ce89 *build/partial.rdb
5af9981f89f0b99c5dfee6a60c3bac47 *build/vignette.rds
4610a2fed56c2bbaec42813f44efea7b *data/sq_trees.rda
f511fa9b88e9138d979a863de5b75050 *inst/CITATION
8b4bfa19f14e9b13cacf2295139ba78e *inst/Get_stuck_in.md
efc6db3eabf782e610bd430b9bd620fd *inst/REFERENCES.bib
64e6f7271ad636e7e76ca2642d4e4fcc *inst/WORDLIST
51e6dbf90b5723fb0f097932f85a1b8c *inst/doc/Critical-distances.R
f790c14f61c020f0efc4fd41444bdc3b *inst/doc/Critical-distances.Rmd
d74ca3f797a9b27bc7177e29a81e90ac *inst/doc/Critical-distances.pdf
baa53dcb827b7a4ac28fc27d5552f864 *inst/doc/Tree-distance-metrics.R
ebbc48695dac7eb841d07dac4445a6df *inst/doc/Tree-distance-metrics.Rmd
ba307991481155e30f0ac2a2609599b6 *inst/doc/Tree-distance-metrics.pdf
145fa68e8da376b4a6fb6d129550965f *inst/preamble.tex
8cd8d2957f7076b88e668e5cbd30462b *inst/trees/all_quartets.new
c77e7e425ce61ad6f4794aa761a96b58 *inst/trees/five_trees.new
866430511e1922de3d699d2bc8d4312f *inst/trees/none.new
27fcf4d2ce88d537dfc7123af31bd851 *inst/trees/one_quartet_twice.new
b149fb81dd30a3ca2c912a05a735af61 *inst/trees/quartet1.new
1dca61cfcdee4fe1b6bdbd31dbdf302b *inst/trees/quartet2.new
a459cbb218d1a152e7b4b61593781063 *inst/trees/quartet_unresolved.new
94c503ebf10649687ebe687dc809e755 *inst/trees/test_tree1.new
72fab1d3604a4bb1bcaf30828a198bb8 *inst/trees/test_tree2.new
70ba65b7a40de93c0b14b7efa0eb0d31 *inst/trees/test_tree3.new
a33e2325f0f8362f37098fd0cfccdf69 *inst/trees/test_tree4.new
5c9b0117aabf90e69f83dfa6caa0b662 *inst/trees/tree_ab-c.new
24c6536d3c734d1ad27d098177e89376 *inst/trees/tree_ac-b.new
453fc4a3acddba283e8f4630145835a6 *inst/trees/two_quartets.new
68aa19327a16788844c103ccdb30b5c3 *inst/trees/two_trees.new
9a6eaab8ddeca800b66b85a3ed869d6a *inst/trees/unresolved1.new
69374825cf9444769488fb0f2817c357 *inst/trees/unresolved2.new
a546a5f909b41a448e80f09a63b8d010 *inst/trees/unresolved_list.new
bacd2af28245430dd6ada44a3bbf7082 *man/AllQuartets.Rd
3a2f2c45f8a6bb6b468ddcc0e0f8c8bd *man/CompareQuartets.Rd
101ff18ba18d84f4e49228d73076a385 *man/CompareSplits.Rd
7621467efd0ed9a63b6b7f40a7944710 *man/Distances.Rd
547acd19875f9eeaa2cd6d069e82a3e0 *man/PairSharedQuartetStatus.Rd
a7cc7a663932689b122fcf682df7dc3c *man/PairSharedSplitStatus.Rd
427eb7723427a5f65b23b40c9c4f203f *man/PlotQuartet.Rd
0fe8fa44e2329b2f913a21b8575465ed *man/QuartetPoints.Rd
7ae6f3ab3f69801d802d729f9598a2d1 *man/QuartetState.Rd
fab90c83f1d1809f4f85a9b77ada30bf *man/QuartetStatus.Rd
8738c16403ce75d87fa876ac16d4f894 *man/ResolvedQuartets.Rd
faffdd7e36dfe956a51e76b6e5836f14 *man/SimilarityMetrics.Rd
cd165cf15bcd37a97443a286d0c1f99a *man/SplitStatus.Rd
d85b5ef5904aea754f9c58c8a5e66fcc *man/SymmetricDifferenceLineEnds.Rd
3f8212b95abdf400894de9da9d6da33b *man/TQDist.Rd
6408b90c293c9f7c3e8491a171fac855 *man/TQFile.Rd
9c540df4611cfe1c2457b9148ace2d86 *man/ValidateQuartetFile.Rd
82c2c87a8cba6c852daa9a0356c8f3eb *man/dot-AddSlice.Rd
64509bf6af03f3758f5f480e551384c8 *man/dot-NormalizeStatus.Rd
7f4bdebcb061f873712751f752054d9f *man/dot-StatusToMatrix.Rd
72f0a93a08744feea16dcd7f759f529e *man/sq_trees.Rd
a3e44e488981f78b8e5fe9087da19451 *man/tqdist_QuartetDistance.Rd
7a1810615a0231f6352b1ea089dbc72b *src/AbstractDistanceCalculator.cpp
e11330ebbd1295da9af918236f64a9bd *src/AbstractDistanceCalculator.h
bd963ed61d0b0101bcd60ee3975345a4 *src/EdgeParser.cpp
5a445d40d8efad503bca4a21b2e937cc *src/HDT.cpp
183de2c5f83f773dddf06f9dac69552d *src/HDTCountingCCToC.cpp
41cd6e024e3db8a6c12da91001a3380c *src/HDTCountingCTransform.cpp
d261b94353ad5a05c8ce218fac4b54ce *src/HDTCountingG.cpp
9b555232a6976177cd0e7c214b1a3c4d *src/HDTCountingIGToC.cpp
e7ff1c0cd71dadce5a0ac249131e32e9 *src/HDTCountingLeaf.cpp
e4a750761b5dcf73d88db33936d198f2 *src/HDTFactory.cpp
6b00ab7b0d11b892e535e739d3e1f44f *src/HDTListUtils.cpp
7ec254fcd5912e137e0f3d965f261693 *src/NewickParser.cpp
228927a55512a21a73918a9df60508dd *src/QuartetDistanceCalculator.cpp
8c62afd3f6a0f73f784b0159cea25b35 *src/QuartetDistanceCalculator.h
dcba4428797a80772d1aaf6887e331e4 *src/RcppExports.cpp
ca0b0884e12bffdfbadf0beae80dfcc2 *src/RootedTree.cpp
2997b46256907d7476283f584c2c2fe0 *src/RootedTreeFactory.cpp
5d0aad726e97548e2c5b10fe6a0b1ef1 *src/TripletDistanceCalculator.cpp
6b7863db62ca71949dd871066822fe2f *src/TripletDistanceCalculator.h
d8c9c57ab3bafe0eda21a30b1750d8df *src/counting_linked_list.h
ebf9c9929a1b3eb80b03ab7535b87a6d *src/counting_linked_list_num_only.h
d1a9c365430e73b2bd34655933e411cf *src/edge_parser.h
e2861a83ce5e617a44fd7733cc79bc3d *src/hdt.h
e947704ae36b3fe86509311137e433c4 *src/hdt_factory.h
0a869dc1a9de30b7d398b26ea7de412f *src/int_stuff.cpp
4ea9b7569fd5eb9673d05647a02c8cdb *src/int_stuff.h
770a5874ce678207b32a85686b9ac27f *src/memory_allocator.h
1f6b14d6adb436e90de6c71a44c96a89 *src/newick_parser.h
ce775ecb23b0a9f1eaef305593426685 *src/quartet_calc.h
ec23fe5e895e6baba0545b9923d01180 *src/rQuartetDist.cpp
3162e4ae408806a2274a4acb55b5f6ac *src/rTripletDist.cpp
bfb78b07911799ac87097c3a02b2f832 *src/rooted_tree.h
09e9e5bf70fde2212aa83d74a1d14f2f *src/rooted_tree_factory.h
36376e6d90437cf1768d906ae187f9ba *src/templated_linked_list.h
b4f38b2477748217cb03d7ceaf8006a7 *src/triplet_calc.h
612cd26c7c4cbc45fe57f6103aff72be *src/unrooted_tree.h
9f004e030d7afdc841db44bbaebc1402 *src/util.h
8ef0157e4c826da8c28a91b1ea420b30 *tests/figs/deps.txt
7ac72d5b67c2dcb7d4d4c6b6e83b0398 *tests/figs/quartetdistance-r/plotquartet.svg
75caacb6bd6608083128ba6db16b6692 *tests/testthat.R
d35c42f5794b2e8e9f4a021e26ac1837 *tests/testthat/test-1-tqdist.R
bdc36722639dcc1f9e6af23d28d50855 *tests/testthat/test-PartitionDistance.R
31ff70b99fd6d797d19b70cb836af0e1 *tests/testthat/test-QuartetDistance.R
e1071fae94feb8a2e4fcab37776fc058 *tests/testthat/test-ResolvedQuartets.R
9799251c2f93b764fd789a361bcecc42 *tests/testthat/test-TernaryPoints.R
45c9bda56bb9b736d92e271e638fd34d *tests/testthat/test-ZZZ-Metrics.R
f790c14f61c020f0efc4fd41444bdc3b *vignettes/Critical-distances.Rmd
ebbc48695dac7eb841d07dac4445a6df *vignettes/Tree-distance-metrics.Rmd
