821856944ab3e46145e2aa1c583518d7 *DESCRIPTION
bd9290cfd0901c58ed8165117de347bc *NAMESPACE
a65ec4d3fda564ceb0c92dfe6baedb74 *R/RcppExports.R
98ef2f1661dcab366a0fb404070e507e *R/Viterbi.R
1456056e4c0f73f551ec5829a859bfb8 *R/align.R
3a8c6839306b2282cc5859936dc00854 *R/aphid.R
86dae797c525c4a1d57f8701ee2a100f *R/backward.R
ea7f7c1f495738ae4bfe346b2edbce43 *R/data.R
c04f3c401a25dc2b29bc9cade17b740b *R/deriveHMM.R
258439705f8892c2cdd5af12ef606be5 *R/derivePHMM.R
3e8d25270c673ef2fb04fc834498f5d2 *R/forward.R
26c4634c7108f9fea8953ef169041e15 *R/generate.R
a5e4a1b24f17c9677abb9daa2785c8a5 *R/plot.R
c73372c6bccf9abbfe6b1eb2539c530d *R/posterior.R
aa57079b4f0551331fcf27f0228a9111 *R/print.R
0fa7aca56d2553ff339cafdd84f05db0 *R/read.R
9454fa7f0bf14269a58a59f0a72a0706 *R/train.R
69fd6200c5a68db3f457966b7e9dd3e0 *R/utils.R
7380c4fce88d31b4e9412ba7fb5e416e *R/weight.R
f0a70f3b4525832b7dab4f47c6f20690 *R/write.R
03d0308c7eb48b6a118d9c205d7256dc *README.md
b2b085520f67a451da7f1d19a8ece031 *build/vignette.rds
2cec5e355bd0f72eb17885d6f7c531f9 *data/casino.RData
5591c4ffe2abef1e50d907b8100b7731 *data/globins.RData
6d7df45f3d14ed8fbf40808b19071350 *data/substitution.RData
35430ea90aa9f7c86af6b9df907826fb *inst/CITATION
075369a018ed73256d9f9b55865b2036 *inst/doc/aphid-vignette.R
c4a432af14537842b28b05d1ff083970 *inst/doc/aphid-vignette.Rmd
e04ad3b156d6476081904e1851c06c51 *inst/doc/aphid-vignette.html
392f3950a4512f2a31c877f5673be3d1 *man/Viterbi.Rd
a9f07e5223453d4a7ba65062873b19c2 *man/align.Rd
f3abdebc270a42b4f9f2f61d34b8f8c1 *man/aphid.Rd
a0afd1368edbbdf8e3894a167a5fa337 *man/backward.Rd
dee2879923ae5c4a1eaef550250fefca *man/casino.Rd
4b4fc09599d8c9ee8435eea62d5e219d *man/deriveHMM.Rd
88a6aa41162eda097cbfe22b85d9f220 *man/derivePHMM.Rd
b991f365af12d3e120747a9ae901fbff *man/forward.Rd
3316d8d2146fb2335d52fb930403a4fe *man/generate.Rd
eea7b6d86ca7b2c4c1dac830a3809e5c *man/globins.Rd
f9679e0e28d1c109071da90f7f7bbb9a *man/logsum.Rd
aa4d4471d4aca627eb7057ee426b4369 *man/map.Rd
48c4cf61dd66f9a5dbdd848d7a8e29cd *man/plot.HMM.Rd
54d2213cb529e5717f3e33c40b93fc2c *man/plot.PHMM.Rd
19f1936be6d9af01838e4f8f0801e3f2 *man/posterior.Rd
f63481d41e9a23f95009252922ae3aeb *man/print.Rd
17938ed78b5f0c95a54fdf612fd94458 *man/readPHMM.Rd
67609edc31125ae4604c5b70f8887a16 *man/substitution.Rd
9b0ef0f6eb7b6410e6b57589f95571a6 *man/train.Rd
c411797a99fc16b6475c30f20540bd3c *man/unalign.Rd
3adb5b71cbd785af86350f690f0ad877 *man/weight.Rd
c028ebf7a9027cc3411158256ea88037 *man/writePHMM.Rd
52561ed26ae347a8e6fe51082d35e738 *src/Makevars
98bfba48f4cf6976e3a1a3b25e7f6d4f *src/RcppExports.cpp
4ae89f800fecac313175228ec1a0c7d7 *src/ViterbiC.cpp
bc9f7ac0061ca90a2d5079a9af659811 *src/init.cpp
52e6f9ddd6cc38d74b9070faf6671cf4 *src/map.cpp
d4dd8f49d66b42529a3f54a467269a1c *src/utils.cpp
3b6e844aed784b2217f9fc8b120a64dd *tests/testthat.R
c7c58079606ef9b1e02c8d2cea8043a6 *tests/testthat/test_HMM.R
518ffa84e6cc033ab125ff896c9ba871 *tests/testthat/test_PHMM.R
c4a432af14537842b28b05d1ff083970 *vignettes/aphid-vignette.Rmd
e1a83c18859052a58c0475ff0facaf80 *vignettes/aphid.bib
