28b94ec415ebd2a4acd28b4a37143dad *DESCRIPTION
dd5aab05e131792744d29fd4f78956b6 *NAMESPACE
0c68aaadc3d2d6333417818b49d13ffa *R/AllClasses.R
7ab90c86ac0b48cadd8e0ed1753ba5fc *R/AllGenerics.R
64966a4c28717b7dd48f6b7151feb852 *R/Constructors.R
2bbc1ac780af35df8291b35fc20d5214 *R/DEMICel-methods.R
e30846c7e9e3c96f3366bd72b62212ba *R/DEMIClust-methods.R
7297c36e8582f5d017d76286b7950b76 *R/DEMIDiff-methods.R
a8fb27da729a4519ae85c84fe79bf9b9 *R/DEMIExperiment-methods.R
4b10e27d530979cf051f86e9b2ddc57e *R/DEMIGroup-methods.R
639ca33111570e1d43a36b7e80841c31 *R/DEMIResult-methods.R
706843eb1f7334574a1ecf1b3c81d1e6 *R/cluster-methods.R
5c6a26f10fc9ff0fc09d6a0dfeed4a99 *R/custom-methods.R
dc9f846ff1926d9f6ba0fce884d8e89e *R/cytoband-methods.R
42f7f6bf789074d2977c40ea48b3bccd *R/diffexp-methods.R
aca2f06e82421eb6e743cdaf1996674c *R/messages.R
cc7726aff3c20bd2adc7fea50f56e8a5 *R/normalization-methods.R
7ae610a3e6d5cc70367bad267b20f71b *R/other-methods.R
54cbcbb8710168327c37c8c3e8f1f75f *R/zzz.R
7348c8adb10c9788970782911a771fb4 *build/vignette.rds
135ddfdb42edd05529df1c5c2ae4f8b4 *inst/doc/demi.Rnw
4197425cd0a0489f2dbe42c5be01fd21 *inst/doc/demi.pdf
afd14f7ada165b785fd40ce48aca5b58 *man/DEMICel-class.Rd
b6fa031a63daa264e1092e19ba2b64fd *man/DEMICel-methods.Rd
2b1ab604ee3555ebb1a1543afa63d649 *man/DEMIClust-class.Rd
7de81d07551c9121478e05756c161b98 *man/DEMIClust-methods.Rd
06738af5bf25308fd36cfb44d6cb8eac *man/DEMIDiff-class.Rd
5bba6ceacc3c975b5784ca56ef7a4cd6 *man/DEMIDiff-methods.Rd
0598a09055fcacaad9a2c72b5cbb839b *man/DEMIExperiment-class.Rd
9d9632220a59650b6019c38dea7c4d72 *man/DEMIExperiment-methods.Rd
36a83f073c886b50aaec62c71498e240 *man/DEMIGroup-class.Rd
23591a326e1cbb0641158bf667d75c86 *man/DEMIGroup-methods.Rd
cba7bb7e5d28c4a49e4c2836d97c4faa *man/DEMIMessages.Rd
b9996bd4c82b96cf15d62f9dd70a8186 *man/DEMIPathway-methods.Rd
19c1706f490f7f4445ad6b4314095216 *man/DEMIResult-class.Rd
96dccdfd3192b4385ee96522139c865d *man/DEMIWrap-methods.Rd
71ca2a0ad7f71b27ae7261a0c24eb386 *man/addCustomTargets-methods.Rd
7920a961d8dce8fd1141fbad598e305e *man/addCytoband-methods.Rd
35b8b2ca644cf7dcc0796557b1ab8d88 *man/adjust4maxprobes-methods.Rd
182405c5f5cab968e0a2fe2ed51074c8 *man/attachResult-methods.Rd
8a0c1eca0202eb161e8d89514f800231 *man/calcHypergeoExon-methods.Rd
90bfefb188123be7cdc2ef7c37611632 *man/calcHypergeoProb-methods.Rd
20d0c4c07da1eb26978c558361cdca0e *man/celMatrixNormalize-methods.Rd
d2fe8b3c0e320b52f8a5d467ed2c7052 *man/check4probe-methods.Rd
5be93718ffdcf9d7e218c2108b7af0be *man/check4target-methods.Rd
cad4817f112108c6381028479304e219 *man/checkDEMIExperiment_analysis.Rd
bc413eb1cf6e2a8a01492be56b251c9a *man/checkDEMIExperiment_celpath.Rd
b1d73a5066f8513bad82b73a30684bf4 *man/checkDEMIExperiment_experiment.Rd
cb51b568e169684f71008e9b5ae3d9f4 *man/checkDEMIExperiment_maxprobes.Rd
fdc8bc23d3fbb525313b16da8fc6992a *man/checkDEMIExperiment_maxtargets.Rd
faea3c40ca27739b120b633b6f60222a *man/checkDEMIExperiment_normalization.Rd
6a8c9db96aadb4114a87cb95a331c1e3 *man/checkDEMIExperiment_pmsize.Rd
5c0590984d4efc8e295839490dcc0f92 *man/cleanorganismname-methods.Rd
f11df306b4ace50f72b3f77815e86a77 *man/cluster-methods.Rd
cf2648a4b7655b78e17a0da8ac496ba0 *man/createGroup-methods.Rd
d3ec67929bd84b5344a417ec569acafd *man/customObject-methods.Rd
ee95eb73ddce6fcf6af288c8c1286987 *man/demi.comp.test-methods.Rd
13ec42d1a8358b689379059c21963d87 *man/demi.t.test-methods.Rd
4ac145856af0a7b0daff90fefef995b0 *man/demi.wilcox.test-methods.Rd
030be04e5a27b6af44486ef517184d8f *man/demi.wilcox.test.fast-methods.Rd
c1ee3437d8418b64f8e9b50f19a3022a *man/demiequal-methods.Rd
8ca420badafa20179f74e404565fc68d *man/demisummary-methods.Rd
e4029f3441b62752575a79839d5f0a56 *man/diffSpliceScore-methods.Rd
84bbdb02953b108b81b2d7c8e92510bc *man/diffexp-methods.Rd
049e81bf3af5b217ff1f4238f73937e7 *man/findCytoband-methods.Rd
5095f9652cb467dae55398036f33f6d4 *man/getAlignment-methods.Rd
c32a5e02c2d216a4fc8d9f277633f67a *man/getAnalysis-methods.Rd
307a5f83d8f4d132f113938f0b728cb4 *man/getAnnotation-methods.Rd
8bb411ba22dd87bb83854e2d0532cad2 *man/getArraytype-methods.Rd
5357064f266166f00bd7a4bd18994811 *man/getCelMatrix-methods.Rd
63e0fe65fead7132c6b432da7c526fb7 *man/getCelpath-methods.Rd
df2b2bbd16d6e6496ffb0f8cd5c52293 *man/getClustMethod-methods.Rd
5e8fcdfeabf8b7bd0e6b372a502d731f *man/getCluster-methods.Rd
b10ee999951be0cf6a1f0cb1d241ac25 *man/getCutoffPvalue-methods.Rd
5f6931e347078548bc8e97f4f67afe2d *man/getCytoband-methods.Rd
e112f10e82f0253f495a83baed6a4a7d *man/getDEMIClust-methods.Rd
75473e5c19f49f98ba3a4c6a70026903 *man/getExperiment-methods.Rd
b8b5823f863ee9f1e0452223bdf193a4 *man/getGroup-methods.Rd
c7200ac993d819a026c697331e476335 *man/getGroupA-methods.Rd
cdde25ea9cf5e4f60d8ec4ae387daffd *man/getGroupB-methods.Rd
67b7fc4b6ae9125d35f012d997e43d4a *man/getGroupNames-methods.Rd
da9b065d60b12d985b49ef62a836a5e3 *man/getIndexA-methods.Rd
bc229cd01c9530192a4374790cff458f *man/getIndexB-methods.Rd
093d7fca7dddedb27817d95834d30d71 *man/getMaxprobes-methods.Rd
ab1dd8ad00f0bed52cecc374996aa803 *man/getMaxtargets-methods.Rd
860fbb14e9ce3c4ba540aa621da93f49 *man/getName-methods.Rd
5ef8b48f22c09d4c1db3117bf170d2bd *man/getNormMatrix-methods.Rd
7dd6159cb544171e98035516f5594274 *man/getOrganism-methods.Rd
2b90f567fc090f3740359c2a5eed8476 *man/getPathway-methods.Rd
9da7797894a4c8ff822e1fdb5b5d9d45 *man/getProbeLevel-methods.Rd
60c02cb987570702df99a38e18fc3789 *man/getResult-methods.Rd
8db8f2673beb8ce4ddb80931cad0a238 *man/getResultTable-methods.Rd
1c561c94efa2717a5672181b7b66451f *man/getTargetAnnotation-methods.Rd
d391bf4efd911406fac0c11839ed667f *man/getTargetProbes-methods.Rd
f7228ace70007c131bc5aced39ba7bdb *man/initialize.DEMICel.Rd
718f3a1cb3441b37007bf9f20e9d9cc5 *man/initialize.DEMIClust.Rd
8c429bc06a527d7f5923ee6a4f052c51 *man/initialize.DEMIDiff.Rd
0c2289f2cce192f21e49a19632269b89 *man/initialize.DEMIExperiment.Rd
40ab383365ccee1b452533868cc55347 *man/initialize.DEMIGroup.Rd
eea00b013373191ce4e437e4f47c91d0 *man/initialize.DEMIResult.Rd
f9f58679a6e5189e58efc6fd1e601ceb *man/loadAnnotation-methods.Rd
91a410de3a1f28de0e178227e0ae4213 *man/loadBlat-methods.Rd
520796f1816439d71f7fc924ff8cc09e *man/loadCel-methods.Rd
1d77b7e3188f4202e02af2e10666bca1 *man/loadCytoband-methods.Rd
816e35c2564e84115405e9805a3bdbb4 *man/loadDEMILibrary-methods.Rd
93ef4eefb16d40672481ae853dba9306 *man/loadPathway-methods.Rd
7b741464179150d6c8b72439edd8f01a *man/makeDEMIResultsTable-methods.Rd
64b501ec0abe98d7d7c5a5ce1ea9cb01 *man/makeUCSCLink-methods.Rd
10d057cb2b45b253d9617439c1777526 *man/matchExonGene-methods.Rd
e1f059b9a2b80faf0d4f2598cae7d4ef *man/norm.quantile-methods.Rd
29f4079ecabc49346bb9899a2c997a02 *man/norm.rrank-methods.Rd
f9d26347af808f55cc8e5fff40baba52 *man/probe.levels-methods.Rd
062e6ca87b0892861526d2039d768d2c *man/probe.plot-methods.Rd
0912091b407cc15def0262a108df7521 *man/totalMatches_all-methods.Rd
192fe406683a31d2bf32ec89c58ba0a6 *man/totalMatches_cluster-methods.Rd
cc841aa3651c414cd65da771085ff84e *man/validDEMIClust.Rd
687095d3b5f91aaf95cfd5c97c57d044 *man/validDEMIExperiment.Rd
a1a3b39361434c16f539a30c87b3cbfa *man/wprob-methods.Rd
2c4a57de4ae882985871c8b35414ad14 *vignettes/MAOB_probe_levels.pdf
0219e5436c0acac4738c6f932827765b *vignettes/MAOB_probe_plot.pdf
135ddfdb42edd05529df1c5c2ae4f8b4 *vignettes/demi.Rnw
4e9301a4d643a699d28525ff3d091c6b *vignettes/references.bib
