commit 36222325f44dc34723436d44301dc7706b4bcca4
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Release version 0.6-1

commit 53af00eed67120fe8c2250110002d46df8a5adbd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    make CRAN happy: change \donttest to \dontrun

commit ca83acec233d162eefbd166522789e8e6e4add57
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (Try to) make CRAN happy

commit 885d6d8648b74192b993c0d2529443aeba7105e7
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Final changes for release 0.6-0; Added inst/CONTRIBUTIONS and inst/COPYRIGHTS

commit de391018cc43b3f0d932ec6958c20dfe7c3d0616
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added inst/COPYRIGHTS

commit 433f05ded9af58893c581e5698a0210a91904e5e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    started preparation of release candidate 0.6-0

commit 12f22f1c3514e092f906a0f0696266bb63746a5f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Make title field to be in title case

commit c978941dc7641a6976907f21e6d48fca1afaa1d3
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Do not replace registered S3 methods from base/recommended packages (fixes #5)

commit 88b43e92059d4de8c7d9979c34d2fb0b60a58633
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated .Rbuildignore

commit d9d10b4dc5813fc65b93fa931d536d0e27c75d36
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex.table.xxx) fixed handling of missing values in group

commit d8f1bafbe8aaa7a136b5aaf8c7962c00d09d99b6
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex.table.xxx) fixed handling of strings as argument to test

commit 5d29106e45cd2b9403b93cccdb9c3feef0e72be5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex.table.fac) fisher test now ignores missing values

commit 149c5e9a779f135b151fabd61b5222cb90fd542d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit 4499a4aefdc1c9daf97fb79824b75e68d25d85b2
Author: unknown <Benjamin@imbe81.uni-erlangen.de>

    documented new arguments test, percentage, cumulative, ...

commit 9b56159ecd0a0dce25432f1a6599f170d44a014d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated DESCRIPTION and NEWS.Rd

commit cf3a3d5892caad29094bff7335912ae8e44e3eec
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added CITATION file

commit 38881a182e6c839410be63714140897f6755500c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    started to prepare a new release

commit de9dc6b7540c55fbd56a9441aab12d9eeb4c90eb
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit 18417dd761391f72231bd1827e4fb0f79b2c9bb0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    changed default of latex.table.fac to digits = 3

commit 8ea96a0713228f8281a7aca53036a7454f710a1f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    changed default of latex.table.fac to percent = TRUE

commit 925a02f4ada37229c9cdf4089c178280b5354f1c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added tests to latex.table.cont for grouped data

commit 2457753785cd8d85b2efaf88a10990ddc82192dd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed formating of p-value and percentage in latex.table.fac

commit e25a7fd72391a06bed0e149cdd53452c1e147598
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added option to display fractions or percentages

commit be7ffde7ef25ccd8adafef5693e2908e26320a0a
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed formating of p-value in latex.table.fac

commit 43aa2078360a26a56347a29e0fad686ba0105afb
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed bug with factor levels

commit 871659ae629b4ae37d54291d12732d2679349c87
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    improved output of p-values

commit 475b7da7600f4f1fdeda00f2da87046f01c6a4fe
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed computation of p-values and improved output

commit 935e3088ead66ecc42cb9b6dd168fd45f50b3142
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added p-values to grouped versions of latex.table.fac

commit 5118e0d794d1df8dda5ae1da7c406e49cfa50009
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    latex.table.fac() now supports more than 2 groups

commit 76e49c80e1c68e465d0db8c828284b0e0ccbfe62
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated release SOPs

commit 77f403a9bcacd982896f9d66a466ca43e1c167a2
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed handling of levels()

commit 1bba2510ed1900483eebd97e4b025a133d0ad1d0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    new version of latex.table.fac started that allows a better display of grouped statistics

commit 330432882981db0d341177d3828872102f6f6d17
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated DESCRIPTION
     - "Title:" now in title case
     - "Description:" extended

commit 431f7f014068aba66261fb57b94d5184b0a49600
Merge: 2244c8f 1a1bc07
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Merge branch 'master' of github.com:hofnerb/papeR

commit 1a1bc079ce798959c6022057618a2d261b0860cf
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update .travis.yml

commit 8ee73aaec9853b91778efc99f230e3b15f789fb5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update .travis.yml

commit 2244c8f765345c4d7bd9349dcfb69a6f658efead
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed .Rbuildignore

commit 3c49c02ac226e6c0e99854468a254c26ead4e696
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit cc6bd90b901456d4f13ef8415195810078bf90c0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Create README.md

commit e0ae53ca0a467a977c8f58c30bb27966575c6cbc
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    enable continuous integration via craigcitro/r-travis

commit 6b9c09238e76edd4d839a03ed53cbfeca63e25cf
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    removed pkg subdirectory

commit c2fe83c873bcf1aea92f1b803f39dcfb686057a9
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - small changes in SOP

commit d54f93573cf990b3f20f38d99f4332940cf3cfd5
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    Release papeR 0.5-0:
    - moved nlme, lme4 and survial from "Depends" to "Enhances"
    - reflext this in tests and manuals by only executing the code
      conditionally on the availability of the packages
    - some small fixes in prettify.Rd
    - updated ChangeLog

commit 03662cbc99079ef8fcf0013d2766a0e7d7f8b803
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - additions to NEWS.Rd
    - minor changes in manual

commit b913f034a59ffe4d949eee61bbed42f0c314e7ed
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - change plot(data, ...) to plot(x, ...) to make generic happy

commit aa375fea214135c68b2c73c7f960ebe2f0977d01
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - started preparing a new release version papeR 0.5-0

commit d439505cbecd4d2396a016775d69d824d1cce815
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - Changed plain text \file{NEWS} to \file{inst/NEWS.Rd}
    - Updated SOPs

commit ce0a1b1a1bf88df6aa14654b789680ed1979f742
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - fixed bug in toLatex.sessionInfo(, citations = FALSE)
      (spotted by Brian S. Diggs <brian.s.diggs __at__ gmail.com>)

commit ffa356eee337ab31eb2e525902216aab9c6f287d
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - strongly improved plot function

commit 901bf564e692d0f05e306b4977a5d83e5b15ec74
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - add plot method to NAMESPACE
    - export some of the labeled.data.frame functions

commit f1c7a492d4a4591bce5c1f542346f8a85b06ce85
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    release papeR 0.4-0
    - added .Rbuildignore
    - minor changes in tests and examples
    - updated release SOPs

commit 1af4b5a89a189d08d6e439c57a26ab6eaa7ca8d0
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added helper script for package preparation

commit 6a04fad16fa8cdd6d983adc96e08ee2dc043ea36
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - make lme4 >= 1.0 happy
    - minor bugfixes
    - changes in NAMESPACE and imports
    - added .Rout.save files

commit e093f8256f9c3dfb046353e00903ee8c9a825e30
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - included better handling of environments in prettify functions
      and checks if the data has changed
    - added SOPs for releasing package

commit a349b838fddd82d0f5e9c5b0bc8c048bf511d686
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - better guessing and handling of environments for model refitting
    - experimental version of environments for coxph and lmer models
    - users can now specify confidence intervals directly via confint, e.g.
        prettify(summary(mod), confint = confint(mod))
      This helps to in case of environment problems.
      In this case, labels should also be user-specified!
    - added first tests

commit 4caa7861f534bfba1560d030841eb237bc5bc1fe
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - updated news file with missing items (for version 0.3)
    - included (experimental) version of prettify.summary.merMod
      to make lme4 (>= 1.0.0) happy

commit 402d1bc27ab96928164cae4b3e57b42461746fee
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - improvement/bugfix in rbind.labeled.data.frame()
    - bugfix in is.labeled.data.frame()
    - improvement of toLatex.sessionInfo()
    - numerous improvements in manuals
    - added missing items to NAMESPACE

commit 6339b2a5d55313c7a6307b78d9780f7e361a518c
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    release 0.3 to CRAN

commit 24f75549f25f7efc1e05e848caab15582bf5da0d
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - added plot function for labeled.data.frame objects that
      allows for univariate plots and grouped, bivariate plots

commit 17da582ea072c7d911bcafbf32bc560e65dd7829
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - added NEWS and ChangeLog
    - started preparation of release candidate
    - increased version to 0.3

commit 5f6108cad442e538d016eae4cfa77960acab16c5
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    minor changes
    peparations for release candidate

commit 94ebd36150c11d4458db291965262035720b8d3a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - fixed bug in prettify.summary.coxph (labels were not correctly guessed)
    - changed default to x[..., drop = TRUE] for labeled.data.frame

commit e67cf294ac8698cd5e609dde69c224f0e08928e4
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added missing file

commit 6cc517a23edf768aaf001a802cf862c50b44777a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - removed summary_fixef
      (better results can be achieved using prettify() on summaries from random effects models)
    - added confint functions for mixed models
    - added function is.labeled.data.frame
    - added documentation for new functions and for extraction and subset functions
      for 'labeled.data.frame's

commit f64d93679667a4119a884af521e3e1569f43c502
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - defined new class "labeled.data.frame" with special
      subset, cbind and rbind function (to keep labels when changing data set)
    - new function as.labeled.data.frame
    - new prettify function for summary.coxph
    - new toLatex function for sessionInfo()
      [with nicer results than the default function: e.g. citations included]

commit 282a01454f0b557356f7476399d2110dea87f84b
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added prettify methods for lme and mer summaries
    lots of improvements in prettify

commit a5bce19382f3afa4ef06fd4a06286905b1ab87e3
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    bugfix in labels(..., abbreviate = TRUE)
    added prettify.anova for Anova and anova results
    refactored code in prettify
    latex.tables.XXX now with argument labels = TRUE for easy labeling

commit 1fa8a93a083a906e895d4f49055683a10e221a90
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    add manual for toLatex.character

commit 313ecb30b9e9999cafeaa29eb3fb9bc208729039
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    make checks happy
    include significance stars
    improved manuals

commit 364b21019f35b403c45440f26719362792b8c1a5
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    improved prettify
    bugfix in latex.table.fac
    increased version to 0.2

commit 2c2565010c70c75f4e164783d52410b09afcecbd
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    new prettify function for summary.glm
    improved prettify function for summary.lm

commit 8809d262cf9e2ff6906c391e43fb62d91308326c
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added toLatex function to sanitize R output for usage within latex
    added automatic sanitization to latex.table functions

commit a45c29dc1f8a7771a383a3dfcc6ac28964ffe53e
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added prettify method for summary.lm objects

commit 40ba1a1d332ae95096777f81657f70d3f5660346
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    improved label handling when data set is alterd (e.g. variables dropped, added or renamed)

commit d0dc4dbd596c58b77c512840e18a42e62954367e
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    first implementation of grouped statistics in latex.table.XXX

commit f6781f764cded072d8c91709ba8380713b2b76f1
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added level argument to summary.fixef
    fixed example

commit 78dba76781e5aae30d09d742f17195be98d98ae7
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    changes in labels():
    - don't set labels to NA
    - export labels.data.frame
    - report which labels are not matching (if any)

commit 502d52afafe33edcd7d62812e18116ebefd00bed
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added confidence intervals to summary_fixef functions

commit 8c4ea546f8046850eb1d9551967b67bd1886a029
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added missing manual for get_options
    added functions to extract confidence intervals for mixed models

commit 54ced2b7a54fbd95cb6b62db9f33ad1d6cbccb34
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    refactored code in latex.table.xxx functions
    new arguments caption, label and center in latex.table.xxx function

commit c2c6e41e94a2fb85e57dc25995adb676ebe6d271
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added labels to latex.table functions
    try to fix lme4 error ("summary not exported")

commit 5b8fa7bd90ae07e427ee6f71255892dc114d5337
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    improvements in latex.table functions:
    - new print functions
    - other internal changes
    bug in summary.fixef now really fixed

commit 5f722640ac5093173767243584acfb4e2abfa1ea
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    restructure code

commit ae6221f80ec6b5348db3ad97564851c1e6cfa7ae
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    fixed problems with latex.table.cont (with only one variable)

commit 156c71280ed146438b49471543106bc32817b61a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added new arguments to latex.table functions
    added examples for latex.table and summary.fixef
    bugfix in summary.fixef: used to terminate when no p-value present

commit b61dc1740110093c879a013f22da0657403bc7bc
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    summary.fixef: small improvements in display of p-values

commit 8c21c72396531cd3f760183ba7deea6823665d77
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    removed default files from project

commit 32c860bd86df6febabf24cfc47aba91f41aaa005
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added prettify function to improve summary tables
    improved summary.fixef functions

commit 97acc169ec32f66077df2325bc57e0d791caa0e8
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    initialization
