026a67e3f830f35798b5bfbc9810a2b9 *DESCRIPTION
1c5fb114d46fa0641b61b07ba8530259 *NAMESPACE
b13157ecf839a9436d1ede6662e77351 *NEWS
db7ba51f9c19b4c982607734daf9c9ca *R/HMMplot.R
9ea8cd4a37fe516d6b4c113340a9cb32 *R/RcppExports.R
f978e13e72f0d019967bd6b140bf63f3 *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
b00aa2725efdab1fdfe16a57c0e11f23 *R/build_hmm.R
d60e7c4a34adaf7f363621e23b9c7d56 *R/build_lcm.R
f0969e4bac67dd70c7ad0bf3cc4e5206 *R/build_mhmm.R
c42d34b5f5dd9d77c5c600f824bce860 *R/build_mm.R
61adcdf1c01a39d7c99c22a6485f461b *R/build_mmm.R
c57088eec2ae645eb7fdbaa032620a48 *R/check_deprecated_args.R
3da8086738691f70003b857cd1959a03 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
8b2c921c5c083c689c650cf97b0f2a83 *R/estimate_coef.R
d0ec80b4e23f6264ac74f215dcf80a88 *R/fit_model.R
77d4f3b6bfce8a721c926b971c9c6fb8 *R/forwardBackward.R
7576f537f3b81e5a3e4741a1d05c4262 *R/gridplot.R
38c2ff380aed5029a23c4f54e8327e4c *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
496c8ac7809e2bac50d5a43cf376288e *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
a70385523cf2a6428faaba87240849d3 *R/logLik.hmm.R
f6d6e1ddb72f66ac43fd7a1d3c119a43 *R/logLik.mhmm.R
aec5ed442b0c4643f5acd5c16a52e0b6 *R/mHMMplotgrid.R
399675fa3ced2bc8150faf424e9e38f8 *R/mHMMplotint.R
982436a14dae3c5dfc1b6be0b2d1b473 *R/mc_to_sc.R
360c359f97d4f3bb0bf02e02676eccb1 *R/mc_to_sc_data.R
f678fdd2298abadf0ef822e95f1ba3cb *R/mhmm_biofam.R
d3982e5832836ccf9c5cc1fbc22f96db *R/mhmm_mvad.R
3a5c7bd467065ab9310cd2beb9569f5b *R/mssplot.R
71b2b8e633e8f2d1762a487c945c4454 *R/plot.hmm.R
9ce430a2ffb4f33bb6fb195583689715 *R/plot.mhmm.R
9aa6e2ec1701a9751742f19d4671829f *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
4e9cbdd59c6a045ed3d4cdee6c0f5019 *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
b132037d5958d8f623d81b9eb56250d5 *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
d70d06cb67ed61539925d0d9dec89915 *R/seqHMM-package.R
f3c09851e5256bb46561267738ddb941 *R/simulate_hmm.R
269678c8ad8b91adf3f821223c318c37 *R/simulate_mhmm.R
18794c287dc840452d948e9ae372c225 *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
d9ee1d84b01d5d248394689ef2161f3c *R/ssp.R
2c30c42276eed790e75dea091ae1a7a8 *R/ssplot.R
3f88d77c39dc280e6111711c513e80dd *R/ssplotM.R
9436feabbdcc5d2a701449aa8c68ac77 *R/summary.mhmm.R
0a8f8d4c287368444e0ac6bb418bed01 *R/trim_hmm.R
98c7d35e8dbd692cb5a44e6c324435e6 *R/vcov.mhmm.R
e693b35be187120d2c749868f691b060 *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
2190009efd6e246b82f04dbd85dce796 *inst/CITATION
60ff1a64048dcb31aebb9926f9dd88a7 *inst/doc/seqHMM.R
01e725b65632c284cf1aa7694cf9f4fe *inst/doc/seqHMM.Rnw
3086a8d86f4e8ddd219b1bc8f355881e *inst/doc/seqHMM.pdf
dd9f06c2b7ed111820a81bb3c50d0d2b *inst/doc/seqHMM_algorithms.Rnw
87b01d5d1730ece968089b74ff835386 *inst/doc/seqHMM_algorithms.pdf
d45d8583fa944e84271be94f4cc31968 *inst/doc/seqHMM_estimation.Rnw
b7e4fff020afb8b3766a85a6bedf68cc *inst/doc/seqHMM_estimation.pdf
6430fee99602a6a4efd84ad5dae65288 *inst/doc/seqHMM_visualization.R
f20eec12cd6f0cfdf24d044e7eb77d51 *inst/doc/seqHMM_visualization.Rnw
8ca1a81cbf50d1a57b32b4f0739647b2 *inst/doc/seqHMM_visualization.pdf
352fe7097a4aff75bc41d249e4a218d5 *man/TraMineR_imports.Rd
8b50598997038b47d50f5850fd4e36d5 *man/biofam3c.Rd
293851b339d652e57704c8e74fdcc9cf *man/build_hmm.Rd
fdaa518c5c71298a5f2fa71fee56cc5e *man/build_lcm.Rd
5e1083e1f551ddfda70edcf495ce7541 *man/build_mhmm.Rd
9bf7bb73f9e4a9527e83497c7ead28bb *man/build_mm.Rd
94416c438c87e03c4c11abbe41e4d3ff *man/build_mmm.Rd
38432acf7def301d109838499751f21f *man/colorpalette.Rd
d6ddf358aef3b23a0b2c60e3fb578f02 *man/estimate_coef.Rd
96edd784a31eb1808302ec707af9bfcf *man/fit_model.Rd
ee9b40c074ec340b4c3c840b6b4235ca *man/forward_backward.Rd
11a9d54d805ed70fca0fb7d0f266f40a *man/gridplot.Rd
1b416193366662c75a37f4dadb2bb64a *man/hidden_paths.Rd
e3d8ab4e8575ae599a6a3bcb749124d8 *man/hmm_biofam.Rd
a0f097af171d4fba95b6dca119e76751 *man/hmm_mvad.Rd
1c968c4e13302c70dc8cda0f3a04e622 *man/logLik.hmm.Rd
1e7843fac13772cf5b1c59e9677dc25c *man/logLik.mhmm.Rd
1d7d44662661196465259b31cb51a832 *man/mc_to_sc.Rd
2353151babce9427aa2c0bef9971ef11 *man/mc_to_sc_data.Rd
9024922f877ae2c54e36c481c7c32138 *man/mhmm_biofam.Rd
5887e9181a838ecd087c040ed86c847e *man/mhmm_mvad.Rd
750afb9650c8d100d96314928a0612c5 *man/mssplot.Rd
d184e252cd9114fc1c5dc31172ed0426 *man/plot.hmm.Rd
02b9276fd14e4ec8853bf05cf789f40d *man/plot.mhmm.Rd
2a2dfec369700ce8c19fa930a04a6511 *man/plot.ssp.Rd
0d79a316cd389e1ed521d1af4a8ea669 *man/plot_colors.Rd
215f4ef8ddc6802b97e7eecafd7cdbbf *man/posterior_probs.Rd
41f568ffd63482a8f155f7d0de32ef6e *man/print.Rd
be0c81c7d477e3359d22738ec19ddaa0 *man/separate_mhmm.Rd
7fca0cf39ee9023714ca3110f2c0fd78 *man/seqHMM-deprecated.Rd
65afe2a9eb9a0894f7be339243627e2a *man/seqHMM.Rd
92d0733887cb2dca72a66e0251dfdada *man/simulate_hmm.Rd
93ef2e98bf8ba125e5805262d1837e2d *man/simulate_mhmm.Rd
d1f98aae641180d9c15b8e1d33fc4f38 *man/simulate_pars.Rd
78e9c0ce6e0f3130e2e1c007d91e0fef *man/ssp.Rd
f33640c77fb9c248d0523db8c3e554bc *man/ssplot.Rd
b2377bfe554a04edbfa62dbb50e723d0 *man/summary.mhmm.Rd
5e17311851590f5e5fdc601e7953afde *man/trim_model.Rd
80f25c9547f89240fce68bd4f932e6f4 *man/vcov.mhmm.Rd
6e63293c8c015bdd7576c72fa9378572 *src/EM.cpp
dd60ebdfe196830d9b761089c8fd793b *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
de61efe1c81dae24349908033350fb38 *src/RcppExports.cpp
20c1252bca0be69e1de313a28e55e834 *src/forward_backward.h
ec0f7a7035dbfd7e1d96ff4a13ca1830 *src/forwardbackward.cpp
3f79087feea85b300ce72675d7b4c8aa *src/forwardbackwardx.cpp
0447b58a8a9e79a15a602263b3528b49 *src/internalBackward.cpp
124765753caaf4109ac6afd0df7ea4e5 *src/internalForward.cpp
fc106ba3b4db61b0b0307b19c7026262 *src/logLikHMM.cpp
7624b73a47eb901e5d971799aa7453a0 *src/logLikMixHMM.cpp
ea9f081247bf5736810800c1022a418b *src/logSumExp.cpp
67eb40ad0a49a39ab3f6f1781c741953 *src/log_EM.cpp
cfb01511e23dad5b64e4e44cc60427c2 *src/log_EMx.cpp
4484c730f61a62737e2ee613d9b821ec *src/log_forward_backward.h
9e368f98352ae5b21b040b5c7dc2bc1c *src/log_forwardbackward.cpp
4110cbd2c915840b8c7ec797b31f333e *src/log_forwardbackwardx.cpp
9f2a3798a1c8ae8283f5519c53831668 *src/log_internalBackward.cpp
ea2592a72a6f94c6b5a8c29bc1341ff2 *src/log_internalForward.cpp
f9373bd8928d57b8c46808acac881240 *src/log_logLikHMM.cpp
266a2c281514dde17739b33567a8be19 *src/log_logLikMixHMM.cpp
4e7063fab88eb6463bf82b7c71dffa6b *src/log_objective.cpp
e7f82a949b9dd089b39f3ded6a4fc2d4 *src/log_objectivex.cpp
141e4fcd4497604cbdc4523f12861183 *src/log_optCoef.cpp
7621a0c59fe10be93c3d0138953e1e9f *src/logsumexp.h
46e653d29c0fd52a02e158ce1dfc1d5b *src/objective.cpp
530c43ee32365f44508a2402dbf558b5 *src/objectivex.cpp
624f7a9e118f68efbc0e622c5ddd38a7 *src/optCoef.cpp
3e0a6f1b95933f128a1c818c9d24a1a5 *src/optcoef.h
df8bbdce2e4261696bf145f8e561a4f6 *src/reparma.cpp
b7005c66c1530bd3e0761c5e50db2121 *src/reparma.h
0238f430ed8b5f90c98d043b89da01ea *src/sa_opt_coef.cpp
299120588f91cf4eb31737f4b6f039e1 *src/seqHMM.h
9726182edf6db7d7697a8c65a5995dbd *src/uv_forwardbackward.cpp
47b684c7b2f2cb87e271a8ad9b4bce8c *src/varcoef.cpp
b8a610297c09eb66cb14cc3a98013a2b *src/viterbi.cpp
002d8ad9bb9e0a83aef0862f71642116 *src/viterbix.cpp
13f14c36543ad8135bb7a023892a6d40 *vignettes/references.bib
aeacf2ebeebc21c15c98285cc5ff272a *vignettes/references_for_vignettes.bib
01e725b65632c284cf1aa7694cf9f4fe *vignettes/seqHMM.Rnw
dd9f06c2b7ed111820a81bb3c50d0d2b *vignettes/seqHMM_algorithms.Rnw
d45d8583fa944e84271be94f4cc31968 *vignettes/seqHMM_estimation.Rnw
f20eec12cd6f0cfdf24d044e7eb77d51 *vignettes/seqHMM_visualization.Rnw
