403aca67e83d1aaf3c0c4e1d7b5b91ef *DESCRIPTION
6d09bc56bb99e294c2ec6382e914b2fd *NAMESPACE
880768d71f8be7d0b72f6f13471a4fea *NEWS
9fd310bd83209ee7e70503eb18ecc881 *R/analysis.R
43d2e6a3da1eda99363603fe4ab237e0 *R/bayes.R
fe5c5f30e4c46892797c087bb6878a17 *R/graphics.R
8cee0adc0afe327728615b7b5ed04288 *R/misc.R
0ea300c8e276b12b913ccd47dba57dcf *R/model.R
63c5062d6afc44c3a4703057ad540d10 *R/next.R
9ff5706411a96f856176bfeb2965e125 *R/workflows.R
46ed80095c1ccd2d2797b62906333562 *build/vignette.rds
13ec09e3243f8c65f612b4cc2f82d486 *data/CP.example.RData
ba25e915eb305258588f3a0e8dc0f2fa *data/CPsnp.example.RData
a407aa68cba3e1a375cc4fe14948aeb3 *data/example.seqz.rda
a13b971aa94a30d151176acb0bccf441 *data/example.seqz.txt.gz
f54e5ffe9e6241b7fa221004852a6a67 *exec/sequenza-utils.py
d3e4e9be3b08fd3e40977f4f8e1aff9e *inst/CITATION
21f308ce1702586a19a23529277e5ea6 *inst/doc/sequenza.R
a4bba5cd0c7552e8f51c07e35e836aff *inst/doc/sequenza.Rnw
fbb2da96e9546ed5994885d9b2b51994 *inst/doc/sequenza.bib
8104df87e25687dc02dd9edc17c2ee87 *inst/doc/sequenza.pdf
69f04c058f0b288f16536127bf3b8924 *inst/doc/sequenzaSNP.R
0df5cbc75be70234ca9c5c2826e6c9ab *inst/doc/sequenzaSNP.Rnw
b3ff0fb06300bb14d598759571d06e46 *inst/doc/sequenzaSNP.pdf
e693a74284650b47a4bf763a70883aeb *man/CP.data.Rd
191710987d5ced5a9d432031d4f856f9 *man/VarScan2seqz.Rd
09123287cf9f7841181bb5e1df512577 *man/baf.bayes.Rd
72a6ed12cf1df2940e2262f50f318a49 *man/baf.model.fit.Rd
1de0646b653200970b66a7d64c041a44 *man/chromosome.view.Rd
cceb57f46dd6eec38b925a3803afc172 *man/cp.plot.Rd
04bf66120c55e03e09f9137aab4a23b5 *man/example.seqz.Rd
9518878688a43562dfd037532e9f1217 *man/find.breaks.Rd
8fc4596f6536ff6088058d3410c32a22 *man/gc.norm.Rd
a832307bcf78a384205b4b6840ffef83 *man/get.ci.Rd
23f573c9de0447b9a1f29e5ab66beac5 *man/model.points.Rd
8bcfe946817eac37fa288a349a31f7af *man/mutation.table.Rd
aa09063a3b8047b939726c2860b142c2 *man/plotWindows.Rd
a77fce586f3bc8b65046ceb3d7296551 *man/read.seqz.Rd
c5e45e6bc6f7b4eaadc160f0d28a72ab *man/theoretical.baf.Rd
f2abe359b28581ac7f261a6185a69efb *man/types.matrix.Rd
8a6379846fcba08794e7ecf7dcf50eb6 *man/windowValues.Rd
4a7d6ffa3ffc0667241b42b480885b54 *man/workflows.Rd
a4bba5cd0c7552e8f51c07e35e836aff *vignettes/sequenza.Rnw
fbb2da96e9546ed5994885d9b2b51994 *vignettes/sequenza.bib
0df5cbc75be70234ca9c5c2826e6c9ab *vignettes/sequenzaSNP.Rnw
