50a364a5050d112816c5f8f8152614bd *DESCRIPTION
ae24aa4e46a825671b91532c20e3e5c6 *NAMESPACE
5c622a4a79f63e5439ef17f5a6f7c054 *NEWS.md
381d08562a76e52ee9ac48c3e1532030 *R/ADWGS_test.R
20951823581d88b55b064438770f25cb *R/ActiveDriverWGS.R
f930007696bc69575683140b323af4bd *R/cancer_gene_sites-data.R
ef49dae15e08f2d92f5a5c2723d0c9d7 *R/cancer_genes-data.R
d7911b997d4a5318399a367363f5f0b1 *R/cll-data.R
260105e6323557898a93cfa415b83ee5 *R/fix_all_results.R
eebd058777dafbfb5431b64c34be4bf3 *R/format_muts.R
44bc4f2ea4a0fd9541ba01525b77e3c5 *R/prepare_elements.R
6c89c4e1a5788436fec30394f2c68ff1 *README.md
159664afe7d09fc90d3adbf7745ff48f *build/vignette.rds
40183e378454d5acf965bd8a6aba83e2 *data/cancer_gene_sites.RData
15158efce7e07c6262a5af48827644d4 *data/cancer_genes.RData
b6688f399ffd9442a5ecb84f546a82c4 *data/cll_mutations.RData
3c1d0e5f60417851b4d346fb4bd66707 *inst/doc/ActiveDriverWGSR.R
d134c0dc49339ff0c7ca39c3722b958f *inst/doc/ActiveDriverWGSR.Rmd
3b10fa432dcc9eb2fc7b8e89d47822e7 *inst/doc/ActiveDriverWGSR.html
546cad9d677c398fe1236cd2e81b1e10 *inst/extdata/cds_blockcount_error.bed
27c3589af795afd2a3085cb940c6ad5a *inst/extdata/cds_blocksize_error.bed
0370bd48e7d1c2af3540cd6455e01c97 *inst/extdata/cds_blockstart_error.bed
b27c286875cc85817119014728ea7ee2 *inst/extdata/cds_chrom_error.bed
13b82c69b077653141fa236187b1db18 *inst/extdata/cds_column_error.bed
b0d6b891c9456ea9180f050dd4492447 *inst/extdata/cds_id_error.bed
de4b1eeabc1299719ee94fd0d317d64f *inst/extdata/cds_str_coords_error.bed
ac4f1764d9b12bb2083f7758819f526c *inst/extdata/chr17.PTM_sites.bed
b8c9e5d4c6fec012054fdc6b931b1181 *inst/extdata/chr17.coding_regions.bed
4474c7ca605f52f6b8dbf019adcb9317 *inst/extdata/mini.ptm.bed
1381b5bf58eb43628e4dd32c7d50e92b *inst/extdata/ptm_chrom_error.bed
9b1382710b03a820ad2b2f356d4812ff *inst/extdata/ptm_column_error.bed
5fbfd37834e06985a945e5b99a6b265a *inst/extdata/ptm_id_error.bed
befdd3020c998e207069e20b65928cce *inst/extdata/ptm_str_coords_error.bed
71d7cb4b55dbcc85a018040b0e9269bc *man/ADWGS_test.Rd
12b6e8833dc50be197d2a699ebc86d2e *man/ActiveDriverWGS.Rd
87873f7c3ee5bb82a49c5513a83f9150 *man/cancer_gene_sites.Rd
e0154af1df884228578c38a790073ad1 *man/cancer_genes.Rd
838d8d416092a68a7227c9552b9f67f6 *man/cll_mutations.Rd
0670a2d21c31235e440c7cdbbcf29e61 *man/dot-fix_all_results.Rd
207bf0617f86c7c25cb13ba70e86575f *man/dot-get_3n_context_of_mutations.Rd
0252b6e6b801765a4b6d5cb8b8ade543 *man/dot-get_obs_exp.Rd
ed88dbf53573d1e4163cbe1b019babeb *man/dot-get_signf_results.Rd
b415402abb9f076ea494484e8986b573 *man/dot-make_mut_signatures.Rd
3e266af5e53071dc7ff50908401a0e57 *man/dot-split_coord_fragments_in_BED.Rd
721607714801186c85cd73e0389625a0 *man/format_muts.Rd
feb4cbdb6a6bd70073e693a34f4c2563 *man/prepare_elements_from_BED12.Rd
7fc35954422078277b9b1a159fb0f6bd *man/prepare_elements_from_BED4.Rd
5daa761282db3b8ed5575800ae667120 *tests/testthat.R
dfd49758623a94ca32983dad2580f587 *tests/testthat/test_ADWGS_test.R
73521045e191ef92f4e1872b1d908e25 *tests/testthat/test_ActiveDriverWGS.R
76231aada13a46ab60529efab443c594 *tests/testthat/test_format_muts.R
26357e1f3705c7549f874c8a57faed7d *tests/testthat/test_input_format.R
8ff621e134253cd15f6db3965f918e33 *tests/testthat/test_prepare_elements.R
7e7d7605694cabe6fba11af313d657f5 *vignettes/ADWGS_diagram.png
d134c0dc49339ff0c7ca39c3722b958f *vignettes/ActiveDriverWGSR.Rmd
