eb99944a7401cd6f4e4232498e983baf *DESCRIPTION
7a4d20391e70052631531ec0d9322db3 *NAMESPACE
e70b0856ee48ab1342b26616f9884a27 *NEWS.md
8fcca8419edb8e5f6f05edb5a9ab164a *R/RcppExports.R
bf9d7e445b23d74a87848ab6b96135a7 *R/compile_reactions.R
8187cadc939326b491c14d43b5db902a *R/ode_em.R
2258529f29949f8295fbd6511399efea *R/package.R
29c88d8ada2ce642e79c72cd95c598d2 *R/port_reactions.R
20e60bf0e3cbe5102622be377a595b99 *R/reaction.R
c21bd34e407b6fb9ea2b30394ae65d5a *R/ssa_btl.R
f795e74184f331a7f8b2c10da7c8ba2e *R/ssa_etl.R
b7b8f91d2169ae81380dc6a6688cb423 *R/ssa_exact.R
22e74d4118b9cf37ecaf2fe701d7015a *R/ssa_method.R
19df42238b05fa2def48090062960dd9 *R/ssa_plot.R
801eee10c7b5c84bb349fb4823d3f112 *R/ssa_simulation.R
acbf8be5ab92cc08b9c202088cbcab07 *R/zzz.R
17d76498d53f3230a1907beb228a7ba3 *README.md
b989a57046780047ce2d1c51d4d60e84 *build/partial.rdb
49decf5be23809b1d5abb3daa8a47c22 *build/vignette.rds
c407323c01d4cb29a0912d25439cb66f *inst/doc/an_introduction.R
2e880d98e5cfe831cfb9509005ebd6bd *inst/doc/an_introduction.Rmd
4fdf806f1dde58dbb837348aaed2f81f *inst/doc/an_introduction.html
057aef922cfb277ecd4852a3064edff3 *inst/doc/converting_from_GillespieSSA.R
02f3e359bac480ff1cdeb577b4c77fad *inst/doc/converting_from_GillespieSSA.Rmd
224d70f2ffd23596e26596d7410caae8 *inst/doc/converting_from_GillespieSSA.html
7346ce9627be9c43cc417f6f4dcb5f97 *inst/doc/decaying_dimer.R
bc2936c466cd068dd2a19585878fd133 *inst/doc/decaying_dimer.Rmd
1efadd5d68f23dcf30ec4632eba32402 *inst/doc/decaying_dimer.html
4792a0ea62b530ca2964f6ee6d2717fb *inst/doc/epi_chain.R
afec1c7d4d4604ab05532bfa4f915592 *inst/doc/epi_chain.Rmd
68b256696d78880bfd02d4f6e49b512e *inst/doc/epi_chain.html
0493c7e0abbeb5444b40266223dd3401 *inst/doc/linear_chain.R
2d52d621734b6049cb2329bc2ca87681 *inst/doc/linear_chain.Rmd
1123820a94a5be76dedc94fa8ae83469 *inst/doc/linear_chain.html
bba0b2ecc5cbd5a6e18b01bb984298e7 *inst/doc/logistic_growth.R
effb05388f34ff7e3e44528d816e99d4 *inst/doc/logistic_growth.Rmd
25ceef37c5ba424d110a6e4591ad801b *inst/doc/logistic_growth.html
7bd92f48fdf2d443871b27ebb7dba577 *inst/doc/lotka_predator_prey.R
1f11dc84adfe1275ddccedd70499c9d8 *inst/doc/lotka_predator_prey.Rmd
260c943745c7376c70238588cd54c8ff *inst/doc/lotka_predator_prey.html
eef3750b1060f35e41c5033e04b408ee *inst/doc/radioactive_decay.R
d942088d72be1c22c1a69ed91d2b2fc6 *inst/doc/radioactive_decay.Rmd
9487e91f06cecbd548e27f49a3a939b7 *inst/doc/radioactive_decay.html
d018e124f94236384709b2a435ac8208 *inst/doc/rm_predator_prey.R
4b2aab709a1d040e68976c1ab154b20d *inst/doc/rm_predator_prey.Rmd
a228633b26a22873a5399699c63c2332 *inst/doc/rm_predator_prey.html
94ab5b395ecb972e2550c6ea542a563d *inst/doc/sir.R
6d7c039d97e12d246b67e02b4b186ef3 *inst/doc/sir.Rmd
25c6025987311f08636a3ecf1aef4954 *inst/doc/sir.html
885656c8fdf1ba13aede0673c30a019c *man/GillespieSSA2.Rd
1de755ee9b886a3dbb8330cd00808603 *man/autoplot.ssa.Rd
bcf754a9219d3c5134ffa9d42cba672f *man/compile_reactions.Rd
fd4c47d761c9f639c188d297da449d64 *man/figures/dependencies.png
47b54f1c878c06fc218c268b82d13ef4 *man/ode_em.Rd
c0210cda6bede49cfe3187de64b0563b *man/port_reactions.Rd
d25d966dbf3fed048815f86e37d149e1 *man/print_ssa.Rd
7f5d1b74229be68010f7b88b1ae41ae9 *man/reaction.Rd
1521290994d19e02cadd0a409702e598 *man/ssa.Rd
032520bc72e0f9ca30b91dbdea4c414c *man/ssa_btl.Rd
36b134ba50341247c4f15abc0328e0a1 *man/ssa_etl.Rd
ca1bc07dc11c6a0af5bdec024514398a *man/ssa_exact.Rd
ffcbd780a1d59d9cf7221e533168bea7 *src/RcppExports.cpp
e372bcef5c17f419bb097ceb4faac4dc *src/ode_em.cpp
9e1d45a2fe4d7c5632cf4c333f90e1ef *src/ssa_btl.cpp
22d3daae3990928fce6fffbb657a1396 *src/ssa_etl.cpp
3b960fed578440c1e0bd9013ee0ec7e5 *src/ssa_exact.cpp
b461dd928b90cb3c7ad01db3c01e7869 *src/ssa_method.cpp
ecab019f3b376fe4149f3425293c4016 *src/ssa_method.h
318b1f6113c610d226416213859a71ac *src/ssa_simulation.cpp
d2da4ce08e70c1728f959f7e47bf94ee *src/test_helper_funs.cpp
519f20d4b66bf43e926da24ee495c7bf *src/utils.cpp
bde4cd198553f4f2f2bb64ade0b2f79e *src/utils.h
1f805c4be7c74e9df39994f09c36fa25 *tests/testthat.R
b42108b1f1173cd9d808546e2add30a1 *tests/testthat/helper-test_propensity.R
3f38c64eff5561aafca0ad2172b8874e *tests/testthat/helper-test_ssa_step.R
9598bac6aa535675370ee8e7fabeb5fe *tests/testthat/test-compile_reactions.R
abb0748b010db2641b963047e151e6dc *tests/testthat/test-ode_em.R
ed1ac27aaa28558d05f8ba4ee2327c4e *tests/testthat/test-reaction.R
04384c9eb910ad0f699875c1081fd4ca *tests/testthat/test-ssa.R
9bf4dc603912d1257df777b56624f433 *tests/testthat/test-ssa_btl.R
36fc2bb46a63705dfb136b951eea2c6f *tests/testthat/test-ssa_etl.R
95e9d9020887f6a76fcf9cf6471f3667 *tests/testthat/test-ssa_exact.R
2e880d98e5cfe831cfb9509005ebd6bd *vignettes/an_introduction.Rmd
02f3e359bac480ff1cdeb577b4c77fad *vignettes/converting_from_GillespieSSA.Rmd
bc2936c466cd068dd2a19585878fd133 *vignettes/decaying_dimer.Rmd
afec1c7d4d4604ab05532bfa4f915592 *vignettes/epi_chain.Rmd
2d52d621734b6049cb2329bc2ca87681 *vignettes/linear_chain.Rmd
effb05388f34ff7e3e44528d816e99d4 *vignettes/logistic_growth.Rmd
1f11dc84adfe1275ddccedd70499c9d8 *vignettes/lotka_predator_prey.Rmd
d942088d72be1c22c1a69ed91d2b2fc6 *vignettes/radioactive_decay.Rmd
4b2aab709a1d040e68976c1ab154b20d *vignettes/rm_predator_prey.Rmd
6d7c039d97e12d246b67e02b4b186ef3 *vignettes/sir.Rmd
