c1ed83d605dc75ba1518666e262a345f *DESCRIPTION
27764cefea84801511d8808fa9b618dc *NAMESPACE
c25d750e143f7e81fc6bc8e112c34954 *R/Functions.R
a38d84911a3ddb9e48bc0d191ba28651 *R/REIDS.R
bc6f268e1766d1b8625b594caf807dcc *R/data.R
198bb83c890e524150c41bfdb4621da7 *build/vignette.rds
958e337bd370007e44f99b05826290fa *data/ExampleFirmaOutput.RData
dfb8144eddca7f6cb551ba342be2b157 *data/TC12000010.RData
f5f088378835944cbed5a634e2a24e95 *data/TC12000010_ExonLevel.RData
add1c4265b01318306a53ad7f6235337 *data/TC12000010_GeneLevel.RData
5a5b6a3e28fa97506a5686da05356115 *data/TC12000010_REIDS_Output.RData
2777d2d6b17b78308b8d5b1cf59501de *data/TC12000010_positions.RData
2bf344b37ccfb11772a309a6e29a0f9b *data/TC12000010_transcript.clusters.RData
67a694badfef827d5ce13f1b205df79d *inst/doc/ASExons.R
7d4b5e10ddaf4e7d0bc47545a5053b25 *inst/doc/ASExons.pbs
e921f431982e298745d4af38f6a9bf87 *inst/doc/CreateOutput.R
345f0d6f6f28181c01b18482dca154b7 *inst/doc/CreateOutput.pbs
55525fe2748837467894a4b61302e258 *inst/doc/DataProcessing.R
d3d1d04ef5a2b313250e6bfb12d45232 *inst/doc/DataProcessing.pbs
6dc0ee652bf4e2ab729446c4a67e065a *inst/doc/FIRMAScores.R
e49f8902b5f22c79b658f7bd23cfe571 *inst/doc/FIRMAScores.pbs
0d67d8cedc905ddc35ec80b1aed1975d *inst/doc/HTA-2_0_ExonAndTranscriptAnnotations.py
f3ab4aa56a99515e378107c8675ea995 *inst/doc/HTA-2_0_JunAssociations.py
dfd4a630bf934869c078fbea554d2e66 *inst/doc/ID_Name_TC.py
c3fb895718a86dece099dc595dd1ae56 *inst/doc/Line_Indexer_Pivot.pbs
2387b6ceab702c2f975706459713b52a *inst/doc/Line_Indexer_PivotFile.py
acf04e4bb1e178f1a7e1331e148baea0 *inst/doc/README.txt
9324d84b35a4b85c4ba6f48366f93f3a *inst/doc/REIDSFunction_ClusterVersion.R
dcf68603057f1daddf2104b60148d73f *inst/doc/REIDSFunction_ClusterVersion.pbs
ec9b4e9b8673a53a6c83a5c9a1b26bdd *inst/doc/REIDS_Vignette.R
f830e8f610df03a65e79da8a12c37584 *inst/doc/REIDS_Vignette.Rnw
041bda8f871134584da3845c0db59615 *inst/doc/REIDS_Vignette.pdf
5de53b51d41e9aaee651ae205cc6801c *inst/doc/SpliceIndex.R
e69789063dec95296db447b610047372 *inst/doc/SpliceIndex.pbs
ff00c513027dfc2ad2741ebb70060a3c *inst/doc/TC12000010_LineIndex.csv
acf01df39d4a247d39859386d940ba79 *inst/doc/TC12000010_Pivot.csv
e0d5e4623a61fac229c8837cfbe6c024 *inst/doc/addGeneId_2.pl
b5077f6e4ffa8afc18baf39b6724be78 *inst/doc/combineProbeInfo.pl
be76092bfcecb75a08dd41a4bfd634ef *man/ASExons.Rd
ea2bfca4d68c06560ec9252892286a58 *man/AnnotateGeneSymbol.Rd
3bf384cdff4b0bb015874ed796580535 *man/AnnotateGenes.Rd
bfc13aa50d3f61754e56c69bb35ad829 *man/CreateOutput.Rd
ed3f1b3df77a57a6985661b1782de383 *man/DataProcessing.Rd
72b025f3983ac4ee11c5ebd03777b866 *man/ExampleFirmaOutput.Rd
6d112e7f8e162aa0872775c8dc2403a4 *man/ExonTesting.Rd
b1c0db380dd22c6be01582a2fe203823 *man/ExpressionLevelPlot.Rd
e27cab29b58e17e12a42d8988a3dd4d8 *man/FIRMAScores.Rd
0f109e0b74fac81a141769b55f04d675 *man/FilterInformativeGenes.Rd
64d261c8b8de5d19a54fe1220d389afd *man/GetIntensities.Rd
04c7a3685de01a67ec2966653c4860d4 *man/JunInfo.Rd
122d8303219bc5f7d2aac3a1c28cb22c *man/PivotTransformData.Rd
5c27b9a2f46d58c21d69b5c1392faa29 *man/REIDS.Rd
fc88e119a9a94c7d92ea352dfb8d7a1f *man/REIDSFunction.Rd
7e304369f20d11504e46bee5372551ed *man/REIDSFunction_ClusterVersion.Rd
2b42fcc5281461309e5265f00af8d2a7 *man/REIDS_JunctionAssesment.Rd
c6d78c2f4aa25040a2e8efe22f75dda5 *man/REIDSmodel_intern.Rd
5375e3754f83788415c0a41a69362e6d *man/Search.Rd
2436fb891139f899f9b3bc2296eb4133 *man/SpliceIndex.Rd
8780226d4122213a375f2997cc3123c4 *man/TC12000010.Rd
b148b2ad5dd2e81c6412388513880279 *man/TC12000010_ExonLevel.Rd
4c84d91e4cbdabe5d86295e3c585042f *man/TC12000010_GeneLevel.Rd
40a3e00a7faa6897a513669c308b0b24 *man/TC12000010_REIDS_Output.Rd
bef7c590fbf1e085efb0054e13dfb065 *man/TC12000010_positions.Rd
105a11e779474dcb720dc750f8a17298 *man/TC12000010_transcript.clusters.Rd
01789044cef004df6aa8a60909bf91eb *man/TranscriptsPlot.Rd
cfffc854b0710e03ba581ea96ab0f5fd *man/above_below.Rd
21364d47818900913f07b4f2e6497a99 *man/arc_radius_locs.Rd
0f14f38b043a9d5f03a75ff7303e3611 *man/arcplot.Rd
c4448cef6156dc6e85c35f5f0e844529 *man/graph_info.Rd
a1e5b10a897674853458ebfab9288cb2 *man/iniREIDS.Rd
e3e0128bb8bdd53814d17e4de245a1eb *man/min_max_margin.Rd
2232fba22543f7b0a1b291bb60afc5c9 *man/node_coords.Rd
72cd93695df5fe031c3a3427c61251ad *man/reidsfunction_genebygene.Rd
e973d703fad9940a7717cb39f3e45221 *man/trim.Rd
6c792a178d055e508a14a0285d7628ae *man/xynodes.Rd
37b2941dbd23282a696b864e8a8126e3 *vignettes/Biblio.bib
8a231265218c7812ff861fb77ae5162b *vignettes/DataProcessing_Folders.png
a5c8f85b14a36ab680212a5ac73211df *vignettes/Figure11.jpg
85b75ddf17d7d0dcc1ac8f03c9dbdef4 *vignettes/Package_1.pdf
f830e8f610df03a65e79da8a12c37584 *vignettes/REIDS_Vignette.Rnw
195c6d5c455298ed385d3d1565d70662 *vignettes/Transcripts_PSR150.pdf
c3c7f26c2e84a1eecfb3ec0c0b37159d *vignettes/asa.bst
