a5201002af7003df042d82f99a06a98b *DESCRIPTION
3e4cb6fa3d99ff281904657d1a0a3a7d *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
ae1ea6cfe2f6d1305e9b483ecc71785a *R/PGLS_fossil.R
3552629a0fb2f4c62ccc841d6526ac8e *R/RRphylo-defunct.R
121cd5d4ce1e1082cc0373a651148039 *R/RRphylo-deprecated.R
f2ab4a0232d86d8773a7463233e14389 *R/RRphylo-package.R
867a5d7722e67916c294c7d556d83667 *R/RRphylo.R
5a1a2f263afa9691d7b5b3106363eaf3 *R/StableTraitsR.R
c3db1376e84193c1f5d77524f207ec58 *R/angle.matrix.R
c992365837ea4796e34b11379263441c *R/auxilliary.functions.R
3f78f1c32d87a99d43fa964d002235e1 *R/colorbar.R
8472fb86a15e68ca23abd6e0da1a7c5f *R/conv.map.R
6000edbee049ac72f284cbb094559b2c *R/cutPhylo.R
948e5ca0bc512d28e149f0d964b02585 *R/distNodes.R
94e54d9f615f4e11b2ebe37b4be167e0 *R/evo.dir.R
c5cebf676f1d8e4a6deda9c4758252e3 *R/fix.poly.R
d74c12760256d02fd5f50fc376769273 *R/geiger_functions.R
ea087f890b34d2c3f9a011e0dc4cc564 *R/getGenus.R
76a2531713a821f1df9167dc4fe8b0c5 *R/getMommy.R
92030b6409f01d18aee1b3f10ba75548 *R/getSis.R
c56ce93a9f5d2d1611c6d8bec249afca *R/lollipoPlot.R
46af091949640773097927ceeacb8722 *R/makeFossil.R
0bc3966138cda517b44bf28655eba140 *R/makeL.R
6ff1f5574e540674bc45a77047145656 *R/makeL1.R
e7e4aedc3c06784455620a084236d84d *R/move.lineage.R
2930afef5d436b0253313fbbb47b40d8 *R/namesCompare.R
c8ea04bc0ce5272b1510374ba1668a15 *R/node.paths.R
6225d378469ab6e103dfd47acfc5f06d *R/overfitRR.R
66dc12f6515ccebafc7f4fa8d5b5a568 *R/phyloclust.R
dbaf7962c9f613aac4226b03eaccda6b *R/plotConv.R
1a6bc63f3d3ff7014aaea4bf38b01ba2 *R/plotRR.R
09e9e2c894a79da8a238447a88f1d11c *R/plotRates.R
843d2d82d2f21309b4f9f9e810e258dd *R/plotShift.R
ec674fcbcd72a11379dc29393d881bf6 *R/plotTrend.R
8dc047722bd1d4bef4faaee739616b91 *R/random.evolvability.test.R
2aa362c32c5f982bdf5dadae7ef93b97 *R/rate.map.R
d3e7fa1377256ec02c159f851c19836d *R/rescaleRR.R
0c483efb976591820c987318d194ba8d *R/retrieve.angles.R
b1182103c7529ff60f3a247389d60f61 *R/scaleTree.R
029d78b4900ad10a8789423e128136e3 *R/search.conv.R
c9f32c95579ba063b6cc6e9fd4ec4b28 *R/search.shift.R
f428602ced881e6b97ff8a8799ad3454 *R/search.trend.R
0e13234268335238ded4858dc735bfc8 *R/setBM.R
d76bfcdb7d3f8224226032dbc634b915 *R/sizedsubtree.R
5878a41266ce0336c809ad65bba78c43 *R/swap.phylo.R
77e517b8ecf28eb96cbc3d25bf6db9b4 *R/swapONE.R
6748db6051a8ece2d49ae1fb26e6a31d *R/tree.merger.R
a218339b72090188f33d271b1d5799c2 *R/treeCompare.R
a87ca38420c20324db0e7c56f6860382 *README.md
cd98d00e83db1154951ef5efb5c5bd0c *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
21cafc55b406aee187090f0a326634d6 *inst/CITATION
bd525520d95439e2845f096df692d313 *inst/doc/Plotting-tools.Rmd
a95873abe553fa4e09f39dbba9487aa6 *inst/doc/Plotting-tools.html
c0c8a379b39e11b01ed5dcb82007e880 *inst/doc/RRphylo.Rmd
35e09a0a380bdd17fb2fd00b3cdbdbed *inst/doc/RRphylo.html
d39c85bf856ecd38a28a4b9a5cb77f74 *inst/doc/Tree-Manipulation.Rmd
f290aaf04742400d7277482cfd9f907b *inst/doc/Tree-Manipulation.html
56063d4aad12af640e4f60512050e0bb *inst/doc/overfitRR.Rmd
85580ffd526c88a37f1be89bac82f08e *inst/doc/overfitRR.html
5e38c57f5c6243414443176775d62685 *inst/doc/search.conv.Rmd
8b4bbe63e05a91876ced40b2edbe98a4 *inst/doc/search.conv.html
e84f4b00e786062c0f4c1c0ee3063171 *inst/doc/search.shift.Rmd
02b271604ef03769c2170078efafae1b *inst/doc/search.shift.html
096a55ad928740ba93eeed74a2231b55 *inst/doc/search.trend.Rmd
4a080722c6f23980e26ff160521136a2 *inst/doc/search.trend.html
90f35e6b7bcfeaafd68ef0dc8e155b3f *inst/doc/swapONE.Rmd
fb1871689147aa0ca348160d64754bc7 *inst/doc/swapONE.html
cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
de67ca56336b6f560839fc0d29526667 *man/DataFelids.Rd
f592999474d4737c21f59575ac556652 *man/DataOrnithodirans.Rd
a847da11baa26e542ebbc453389dc0c5 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
d9188b8b5de889f2d9e46c8de318589f *man/PGLS_fossil.Rd
62df4959b47ea744b6364e4665ad6932 *man/RRphylo-defunct.Rd
b1c00ca093e7f3477df3255244cf9522 *man/RRphylo-deprecated.Rd
8cf785ac2c9bf9b8a60648de1bd6ade7 *man/RRphylo-package.Rd
5c44b9fbd010239e473f0b87629774cf *man/RRphylo.Rd
49bad362f5c536eaa1deff9a14383650 *man/StableTraitsR.Rd
a3ffc06c2b027a9d90c3aec63ae28c7e *man/angle.matrix.Rd
e59da80bc40c9a20d8d9156b9a7cb90c *man/colorbar.Rd
aa092b9b0c6af34c775419d11cdad596 *man/conv.map.Rd
3020eca694278e01db7336fe3bce2623 *man/cutPhylo.Rd
bc18f45c9d57c19cb6a5b02a3517c00c *man/distNodes.Rd
a8020baf596868d2ba052076aab27967 *man/evo.dir.Rd
37444eeee82979c338b0ca1426dcb127 *man/fix.poly.Rd
9ca5465eec8d533851b84bd6a9c00118 *man/getGenus.Rd
0325923641b041c9f46d03921f403816 *man/getMommy.Rd
87899a18538b1d7934f815cec9ac60e9 *man/getSis.Rd
f68c9adb5983c38aa85579ed17a18ea7 *man/lollipoPlot.Rd
aae4e8bf77e5564046bdbf0a533f96b1 *man/makeFossil.Rd
81913e50f1d7c91185b865fcd568692d *man/makeL.Rd
6a4c51d45eaeafa62532e307d6fde604 *man/makeL1.Rd
54fc53475ffb401f40fbc0258707eb24 *man/move.lineage.Rd
bdf69bd38f312fcb651b5fa74721ca06 *man/namesCompare.Rd
ad5478da4ef06a25e497601bb1e01724 *man/node.paths.Rd
ffa7703af3204fc643cef7434ac2af3d *man/overfitRR.Rd
498bb61484e16213807837e834669e9c *man/phyloclust.Rd
7cba1724d6b947bb6d6e81959528ba6a *man/plotConv.Rd
c9a618c4c3f383cb60411ec6603d1a55 *man/plotRR.Rd
52f5a1197891897b524e2bf96330d90c *man/plotRates.Rd
2b44a1bf228fe018b8e21963461d5c2f *man/plotShift.Rd
def480b6aabe387c260327778dba5868 *man/plotTrend.Rd
56d71cc4fc75670a896facd9f398a7ad *man/random.evolvability.test.Rd
ba152039c510cbb797d46de8736a443a *man/rate.map.Rd
1158cb5ea99c536ec3f3cc11785a6926 *man/rescaleRR.Rd
3e82e176936cf8da68a1bcae9cb70ecd *man/retrieve.angles.Rd
35f01f38b3559d5d6b51749c618c9648 *man/scaleTree.Rd
5c0ae8b4210099d140395aff050f89f3 *man/search.conv.Rd
63e01409a6004179fb0fbc85da18b81f *man/search.shift.Rd
fde30546062b0f09e5f83ef38d070780 *man/search.trend.Rd
67a7a6a3b82f3925225ae856c98a7f9f *man/setBM.Rd
737548319aa720170216af41bab7d377 *man/sig2BM.Rd
031b461db3c0b2ef60df70493f756434 *man/sizedsubtree.Rd
769ae1945ac9614d74b7a6a4e1f20943 *man/swapONE.Rd
3bf180593c8c003ae40a08848e378450 *man/tips.Rd
5241813a461af4eee5dfaedd6b531144 *man/tree.merger.Rd
41610d2be938b69b4bc18e7d52f3fd26 *man/treeCompare.Rd
e94ca5fa189c621ffa8c1047169942e0 *man/treedataMatch.Rd
bd525520d95439e2845f096df692d313 *vignettes/Plotting-tools.Rmd
c0c8a379b39e11b01ed5dcb82007e880 *vignettes/RRphylo.Rmd
d39c85bf856ecd38a28a4b9a5cb77f74 *vignettes/Tree-Manipulation.Rmd
56063d4aad12af640e4f60512050e0bb *vignettes/overfitRR.Rmd
ca1847c19246de8fd746f4cc26197253 *vignettes/plotting-data.Rda
68d170da42d6f1c1f33d7a60eda02ad3 *vignettes/sc-data.Rda
5e38c57f5c6243414443176775d62685 *vignettes/search.conv.Rmd
e84f4b00e786062c0f4c1c0ee3063171 *vignettes/search.shift.Rmd
096a55ad928740ba93eeed74a2231b55 *vignettes/search.trend.Rmd
1988c29ffd2dbd78c8f8e55415c2add9 *vignettes/st-data.Rda
90f35e6b7bcfeaafd68ef0dc8e155b3f *vignettes/swapONE.Rmd
