6d092b98c2fcbbad031e07366ed145eb *DESCRIPTION
ef3d9f056adaa322680184035912700f *LICENSE
73290e88c0feb40a0939c0850cc2e7a8 *NAMESPACE
9fd28f1915bf371cfb67b92205f1199f *NEWS.md
6c05422de87f0514bc16b184383eda83 *R/1_initialisation.R
3d004853b5e992cc21290bca1992a683 *R/2_backbone.R
aa92be0dae1a7bbfa083d7eeff26b0ca *R/2a_modnet_pieces.R
61eea6176cb08ce3f2c21381f783596f *R/2b_backbone_lego.R
6fa3ba8e648221bbb5cd35dbbab632d0 *R/2c_backbones.R
3fa21a867c02b907ee1745571b686561 *R/3_tf_network.R
2ca1ad46a9afb1e8d809fb1e89b4b194 *R/4_feature_network.R
d1963addbd7c3b8ba6f90476e2344e48 *R/5_kinetics.R
b41bae4608aebe2295973291a46ab969 *R/6_gold_standard.R
e27827b2260468fc0696ad38a480f6c9 *R/7_simulation.R
49f5336b1c837aefdef36e67ebbea4a8 *R/8_experiment.R
26783ce64cfa09a9b84c06500745839a *R/9_dynwrap.R
17c0868100c17be5013093cb78d464e2 *R/caching.R
a344f630869e0f3262197c087cf38e9f *R/colour_brighten.R
e52a16d0f505e49ca6d04314c6673878 *R/data-example_model.R
7c1087561fce3086b9ec787687154e16 *R/data-realnet.R
048d66dc50d010ae27bb446e7db571b3 *R/dimred.R
e61b1b8109c3a8d0ac71d1484fce210c *R/generate_dataset.R
cb4261bdf20cfde4adb52d81763afaa6 *R/generate_partitions.R
61593b78e6819d27be1846fea0d8a145 *R/package.R
f23282257930f8ceab5ae01062b22b5a *R/plotting.R
7fde42e5d7a970719855e5eaa59aac7c *R/reexports.R
7e8d861b430490f653a2fcb210a86af7 *R/rnorm_bounded.R
d061ae4058f0f9367f7874c12d5f075d *R/simtime_from_backbone.R
87c8db3ca6673d3ae8eec2ba624a5275 *README.md
dc5b0abdab5064e46c230cfc3f3a9f22 *build/vignette.rds
d095d2858cd09b39f9c7c3a44a28312e *data/example_model.rda
5a35bfe11f49866d86f9ad69ec839c35 *data/realcounts.rda
577838d68401ca076b3f6c8a877c8754 *data/realnets.rda
563ef20efaf5276a4092dfc275fc7e81 *inst/CITATION
df3f900c7f65ddc578a4b11b4d68e804 *inst/doc/getting_started.html
7b1f5d1ef3f996bb3b77a1d8c3705439 *inst/doc/getting_started.html.asis
2c0e72fe5def6f3bf56ac0dd317a84a2 *inst/doc/showcase_backbones.html
934e3f2e66f3e0e0b2e01ae857f1c596 *inst/doc/showcase_backbones.html.asis
74ac393c1fd527527cc8a0bee097b15d *man/backbone.Rd
8740685bbf8079b0982c724eab4f659a *man/backbone_models.Rd
131c002053468b9a77058e1cacfe7c8a *man/bblego.Rd
bfde493e55e228bac64a3f64a90a7a49 *man/dyngen.Rd
733e7922b738e4995b6a58c969c8dfdd *man/example_model.Rd
167d84e54794f0d448da8ff535c355d9 *man/figures/README_bblego-1.png
bf61e174292796810d8d6be73c9c2fba *man/figures/README_bifurcatingloop_plot-1.png
616b7ff76d55d4e966d9f24ac1572853 *man/figures/README_compare-1.png
4a3a3f39ddfc38b12f77d5eafbe9dea2 *man/figures/README_dyno-1.png
aff118aa72ef49c265edb584caf2acc8 *man/figures/README_dynplot-1.png
51e9c59a2a2610bac5740d414eb772ec *man/figures/README_dynplot-2.png
a970083e2d70f3b4c8d1dcbef99c55a8 *man/figures/README_expression_sim-1.png
8d3656a4d711e409de7223ac589484a4 *man/figures/README_gold_pt-1.png
d3c21024d22edacc4adead0630940eca *man/figures/README_gold_pt-2.png
f582d9c15c3f4163eeba193047c47631 *man/figures/README_gold_standard-1.png
3f314b4f6096deb39ec27959308815fa *man/figures/README_init-1.png
6569e95d993b154b61fdaa7b04532fca *man/figures/README_init-2.png
561033c09ec3eec15d7a7ce70838a08c *man/figures/README_oneshot_plot-1.png
01455f033974ef5af4060fbfc81b1e6e *man/figures/README_oneshot_plot-2.png
3dff889f7d6d7cd4c7dda59585b5444c *man/figures/README_oneshot_plot-3.png
a732f870fa2e3707798be04833f7b1b6 *man/figures/README_oneshot_run-1.png
b03e4abfd1c925e4d55f5a63a771cafa *man/figures/README_overlay-1.png
7aeb49cd75af46ebe3af20be4bcdc427 *man/figures/README_simulations-1.png
20223491fc7db4d41b960c62bdacd4f5 *man/figures/README_ssa-1.png
3f8c64f385ec4082cb77ac69e2d834eb *man/figures/README_ssa-2.png
de2103ffeb4395e6fee33f3d29f52cb1 *man/figures/README_target_network-1.png
91e12fa1b5982f16a474105c140bc79a *man/figures/README_target_network-2.png
e5273792339d05e4060ae33bf63124bf *man/figures/README_tf_network-1.png
1cf19816eb8c44faf1df56771ea12dbb *man/figures/generation_overview_v1.png
13deb3bef83871bb1b76a9aff21a7964 *man/figures/generation_overview_v1.svg
93b3fb01daee21a88f980b3e38a1ae77 *man/figures/logo.png
666608037020f76d3df568fb8141cf74 *man/generate_cells.Rd
85427a5d654b3c684fc68b2e2463f7d6 *man/generate_dataset.Rd
2aa726f66d110c80e742d013669573ad *man/generate_experiment.Rd
5faa25228b506c40afe76e58454ecec4 *man/generate_feature_network.Rd
d72d4d649d141e555dd210e1e0762ffa *man/generate_gold_standard.Rd
ca5567ded0c2a1a0c549a320f4a9988d *man/generate_kinetics.Rd
ba5ce124fe8f41a4aadf5f0074dfa39a *man/generate_tf_network.Rd
1c042648226e00c3d05bda98cbddceaf *man/initialise_model.Rd
bd087c3309eee0d9cd11caed264ccef9 *man/kinetics_noise.Rd
e321dbc123a242d4ce15f862be655506 *man/plot_backbone_modulenet.Rd
2445bce1326038a149532472e78979d7 *man/plot_backbone_statenet.Rd
2f3971e7141c2c7b384aa4658a9eb321 *man/plot_feature_network.Rd
912e6f8f1a2dde2aa2297a99b7d86848 *man/plot_gold_expression.Rd
fc3a8afb574c9569566a2fb46638d333 *man/plot_gold_mappings.Rd
71e0de847877c533fd170fe0ca71707a *man/plot_gold_simulations.Rd
faa373e4691faedb9ab0bb1d3b718db6 *man/plot_simulation_expression.Rd
bd9d5f4e6680e1cc05d4cf73c61251df *man/plot_simulations.Rd
7d9cef49a11bf6c8b02fa7abdf1d9c30 *man/realcounts.Rd
9e5765959277718ec29aba4ae845079a *man/realnets.Rd
4354ce22b9a6730ca0b015ca345f5aa9 *man/reexports.Rd
ee7aa96aa9b733524078d40c199f5674 *man/rnorm_bounded.Rd
038cbc1bf94ed0adf5f1d5009676a5ac *man/simtime_from_backbone.Rd
e09e1c6cb9553081f35d13ddb858647d *man/wrap_dataset.Rd
13b0f30e310026310b906e753fcd2b34 *tests/testthat.R
4986a34330d68979cda09ff5cf630e52 *tests/testthat/test-1_initialisation.R
5cb9437d51f06bf58faa4fc625837d62 *tests/testthat/test-2_backbone.R
3053e0a53880bc5dc987324eb967692c *tests/testthat/test-generate_dataset.R
30f57612dff26950f2217f4ba60534c4 *tests/testthat/test-generate_partitions.R
7b1f5d1ef3f996bb3b77a1d8c3705439 *vignettes/getting_started.html.asis
934e3f2e66f3e0e0b2e01ae857f1c596 *vignettes/showcase_backbones.html.asis
