Package: kmeRs
Title: K-Mers Similarity Score Matrix
Version: 1.1.0
Authors@R: person("Rafal", "Urniaz", comment = c(ORCID = "0000-0003-0192-2165"), email = "rafal.urniaz@gmail.com", role = c("aut", "cre"))
Description: Contains tools to calculate similarity score matrix for DNA k-mers. The pairwise
            similarity score is calculated using PAM or BLOSUM substitution matrix. The 
            results are evaluated by similarity score calculated by Needleman-Wunsch 
            (1970) <doi:10.1016/0022-2836(70)90057-4> global or Smith-Waterman 
            (1981) <doi:10.1016/0022-2836(81)90087-5> local alignment. Higher similarity
            score indicates more similar sequences for BLOSUM and less similar sequences
            for PAM matrix; 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix 
            versions are available for PAM and BLOSUM, respectively. 
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
URL: https://rafalurniaz.github.io/kmeRs/
BugReports: http://github.com/RafalUrniaz/kmeRs/issues
LazyData: true
biocViews: Software
Imports: tcR, rDNAse, utils, stats, Biostrings
RoxygenNote: 6.1.0
Suggests: knitr, ape (>= 4.0), rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-10-30 23:28:37 UTC; Rafal
Author: Rafal Urniaz [aut, cre] (<https://orcid.org/0000-0003-0192-2165>)
Maintainer: Rafal Urniaz <rafal.urniaz@gmail.com>
Repository: CRAN
Date/Publication: 2018-11-03 16:00:07 UTC
