48a19a17977e0252f9dde4fff856a0ad *DESCRIPTION
87aca8b4e0f026ee8203d231f6f05136 *LICENSE
532c9c1cb49377c323bca56ba315d978 *NAMESPACE
8175bc6488434f17aacb1137af9373c7 *NEWS.md
8add172a092a1b902c4595200a049604 *R/RcppExports.R
058a5ca93ffa8690539ddc30c7ec0543 *R/boot_pvl.R
5089d62eb852fd7aff9cc25f7afb5987 *R/calc_Bhat.R
68e822a2ed525884b60f0e5574075ed0 *R/calc_Sigma.R
63305cfd85cc81db751e9481995cbca5 *R/calc_covs.R
6ed7c215799736023d3e2936e154526f *R/calc_lrt_tib.R
f7c68da6a48dd87e1d65b208c544b1e8 *R/calc_profile_lods.R
628b3b9e10a9d99df001b403dbd4d8be *R/calc_sqrt_mat.R
17cc885779cdacb062802cf1c9823109 *R/catch-routine-registration.R
360923d38016bbec4d6ade12410662b4 *R/find_pleio_peak_tib.R
ac4669916a432e2cfb8196bd0b9ff499 *R/fit1_pvl.R
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e54251ff834e8294f3f9e511bd57e218 *R/prep_mytab.R
4337f4f8327fd359c34172f3cea689b3 *R/qtl2pleio-package.r
0fe64f6e6b5bba182e3f0e048217d05e *R/rcpp_calc_Bhat.R
12759dd937aff722df49accf80ce6a12 *R/rcpp_log_dmvnorm2.R
c43923db5ac669b7255c653bf93c6407 *R/scan_pvl.R
49676c2f32eebb7f262e05b2c3693d07 *R/sim1.R
8d2487dbf45064f33b08e5a80830b68e *R/utils-pipe.R
5f9895f2a6d2d3cfe9c2ed44f16b4280 *R/utils.R
4646b7853aff8f48471df531ac8f042a *README.md
875b5486bc463f1f063037c95c8f0633 *build/vignette.rds
f4ed551a71806b9c1418aaae94e16ce8 *inst/CITATION
3408f146bf44955042de8dbab23a669e *inst/doc/bootstrap-cluster.R
4bc86808f2ed83114a044d6315a3e71d *inst/doc/bootstrap-cluster.Rmd
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4665d3f199609cb444be8a263887053c *inst/doc/recla-analysis.Rmd
297cf6a7f66109f60d038e293e4a1508 *inst/doc/recla-analysis.html
450595a6468546261e68f21cf3a11edf *man/add_pmap.Rd
905d84f221d9fae866279cbb232c666e *man/boot_pvl.Rd
c312774627d8a57a07866fed96ef52d0 *man/calc_Bhat.Rd
9b7281fcc13ea0fb765e71a7f35b6636 *man/calc_Sigma.Rd
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912fd2329d5dbfc74b3170e8885dd814 *man/calc_invsqrt_mat.Rd
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25122f2f5139d5a3dc4844507431496a *man/figures/README-1d-lod-plots-1.png
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196256a0d2a4214afef991bc7269388f *man/fit1_pvl.Rd
6fdc9c0b127834cf023714650815a293 *man/get_effects.Rd
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1f7896a1b866ff9ae89ba35be7c7b6f1 *man/pipe.Rd
daae5a3527de0b4ab42d279f8aab04c6 *man/plot_pvl.Rd
ffb5721af3d266fa9b033e75a3581742 *man/prep_X_list.Rd
21f3ce4a4cce232069ceb74f0361abea *man/prep_mytab.Rd
b4b9cbf295bd9787f6c03d039ada5890 *man/qtl2pleio.Rd
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9dc53ef706eb15998ccbc9744c18532a *man/rcpp_log_dmvnorm2.Rd
9568459157f2306fd9e74c1c3ed355de *man/scan_pvl.Rd
0d789c9f9f3ebb5cc50fc3eb4b268df1 *man/sim1.Rd
1341cc64048f90ceec49737137dde0f5 *man/subset_input.Rd
9282820f5a5786510d152118987c2124 *man/subset_kinship.Rd
4c1568def1d97bc2337bc51d8f3a0693 *src/RcppExports.cpp
bac91a370aad045e34e3b56789ccc8c8 *src/eigen_sqrt.cpp
b64b87dbb5b6560bc7f6df822acc8ec3 *src/matrix.cpp
88ad5e69679c55a6c5c81b084e868894 *src/matrix.h
660e434288e5a79080f21d6e3d8ef592 *src/rcpp_ols.cpp
98e1ddf0d51dffad4167ac1463c97308 *src/rcppeigen.cpp
3332a4affe5b211b37b65a3d3311d9ba *src/test-example.cpp
c2cb0c30e10da611f9fbe56aea52f7a9 *src/test-runner.cpp
c1c274e5c1eb5c07330ba6aba388d861 *tests/testthat.R
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d4dec278c695f5da18e78256e4e97a16 *tests/testthat/test-cpp.R
b266e4ac00d9612a362c71f31983875d *tests/testthat/test-drop_depcols.R
5881aabc1e5714f2d322311fb3935932 *tests/testthat/test-find_pleio_peak_tib.R
736afa587095cca4e43716bf8631ed7f *tests/testthat/test-make_id2keep.R
a83e2032e7438ed1d190709f4352a0e9 *tests/testthat/test-prep_mytab.R
17027cae95291f6dd4d82f66c3b4a92c *tests/testthat/test-rcpp_calc_Bhat.R
58cbcad3ee935d81b6e4482ecc40ddab *tests/testthat/test-rcpp_calc_Bhat2.R
459be3be1e266f0c754053d080b4d27b *tests/testthat/test-rcpp_log_dmvnorm2.R
e588ca1ace97c9b2f6888c98b6d96c92 *tests/testthat/test-scan_pvl.R
1cab050ab2a031565543178a42af7679 *tests/testthat/test-sim1.R
1ce0a8b7a60b78d0fed079877f0d06f7 *tests/testthat/test-subset_input.R
4bc86808f2ed83114a044d6315a3e71d *vignettes/bootstrap-cluster.Rmd
593f9fdcf76c257e0782c22b1b11c3d0 *vignettes/d-variate-analysis.Rmd
e57ab86c9379ac0f14fb561578b96954 *vignettes/qtl2pleio.bib
4665d3f199609cb444be8a263887053c *vignettes/recla-analysis.Rmd
