Package: sigminer
Title: Capture Genomic Variation Signatures using Non-Negative Matrix
        Factorization
Version: 0.1.11
Authors@R: c(
    person("Shixiang", "Wang", email = "w_shixiang@163.com",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9855-7357")),
           person("Geoffrey", "Macintyre", role = c("ctb")), 
           person("Xue-Song", "Liu", role = c("ctb")))
Description: Contains functions for identification of  
  copy number signatures (Geoffrey et al. (2018) <doi:10.1038/s41588-018-0179-8>) and 
  mutation signatures (Alexandrov et al. (2013) <doi:10.1038/nature12477>) 
  by non-negative matrix factorization, signature analysis and visualization. 
  It can be used to capture signatures of genomic variation, compare genotype or
  phenotype features of different signatures and thus uncover the relationship 
  between the mechanism of genomic variation and phenotypes in cancer.
URL: https://github.com/ShixiangWang/sigminer
BugReports: https://github.com/ShixiangWang/sigminer/issues
Depends: R (>= 3.5)
Imports: cluster, corrplot, cowplot, data.table, doParallel, dplyr,
        flexmix, foreach, ggplot2, maftools, methods, NMF,
        RColorBrewer, tidyr, magrittr, purrr
biocViews:
Suggests: BSgenome, BSgenome.Hsapiens.UCSC.hg19, cowsay, ggpubr, knitr,
        rmarkdown, covr, testthat, prettydoc, pheatmap
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-05-07 07:25:30 UTC; wsx
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
  Geoffrey Macintyre [ctb],
  Xue-Song Liu [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Repository: CRAN
Date/Publication: 2019-05-07 07:50:03 UTC
