f2ce3cf535df820fee961afbfea9729c *DESCRIPTION
602d2ad61c404bcbc9ace4b778fcf6bb *NAMESPACE
58e8e3c2fb716d1e1f605d0c95ea7a6e *NEWS.md
91dba897e9fa25a06dce3c76fe0397bd *R/args_classes.R
4a20857370665766c0898d6e4e9ee2c7 *R/imports.R
0185c5d18ae74aeeff81a8274cea733d *R/in_silico_population.R
7691aab1e0cbce37f1d5ae91dabed84d *R/in_silico_system.R
718cb100619225ebb7c45bb463e3d069 *R/julia_evaluators.R
af28e3e568256e177331cc77ef0e83f6 *R/stochastic_simulation.R
03d34514a42f9e6ff4525d137a51984d *R/zzz.R
8e3389d63e3766c57d9b34d2b7df93ea *build/vignette.rds
ffb203dae272839e6b80457cb344b6fa *inst/doc/sismonr_vignette.R
1ab005f06690b9d8e70e648da8627e7c *inst/doc/sismonr_vignette.Rmd
c43aed980e0c8451ec2fac4844f4e6c1 *inst/doc/sismonr_vignette.html
51db2ffa47988b6225bd858837ca456a *inst/julia/network.jl
5f9840700d91ae03102eb1750d4675ac *inst/julia/stochastic_model.jl
154762d3602f89d43cc270b9164e727e *inst/julia/stochastic_simulation.jl
8af2314be3d326e39319c64edcb4360d *inst/julia/testModules.jl
1959eda23de56e92c473289f9efd9df0 *man/addComplex.Rd
9a13d708b38580d0704dc389069bf2f7 *man/addEdge.Rd
44af643784530647098a7ba8541cd5c3 *man/addGene.Rd
cec28478f274609c5e190371c4e29083 *man/callJuliaStochasticSimulation.Rd
75de0c1e2c052d26d7247076a8d97d35 *man/createEmptyMultiOmicNetwork.Rd
685a3726d50d69d4edf329b49cbcb4f8 *man/createGenes.Rd
7c0d24f1ec63b4468a06a542196b0158 *man/createInSilicoPopulation.Rd
3f32a5a35e2eae6fe5c079e72328aa9c *man/createInSilicoSystem.Rd
e069eb413fc95e3f96f0bad40ce6c2da *man/createIndividual.Rd
05cc5511bfa853b1c568da2072eb9f36 *man/createMultiOmicNetwork.Rd
e3e949e206756fe682196e14b67721d4 *man/createRegulatoryNetwork.Rd
ace6220c46b825210ac0f8b3ad1ca9af *man/createStochSystem.Rd
36f39943f0db101f0dfb2ad8fb567a17 *man/createVariants.Rd
67ccbc777230062c9fba1e5e44da3f33 *man/df2list.Rd
8c831f1ba2c59dfb50ee5984dc843b3b *man/findJuliaNoError.Rd
6338496693d2a33dc8b831cb616e34e5 *man/getGRN.Rd
9041d35af0e1b5a3decae0f3fb3cbfc3 *man/getJuliaEvaluator.Rd
f5a557c521e1130c00746bb5c21aef1a *man/getRNAseqMatrix.Rd
fdacde44131e13d64306f3a26f605101 *man/insilicoindividualargs.Rd
80ee9c7a526b0dc18dee1a9391151fff *man/insilicosystemargs.Rd
77cb375a7b784a43fbdf7ccae801924b *man/mergeAlleleAbundance.Rd
f7f14ac32996dc031fe1968941dd9222 *man/mergeComplexesAbundance.Rd
883ee02a4cd7f1a2379db5960b3a2fce *man/mergePTMAbundance.Rd
6ad398ca60c27a7007667384ee51e2ad *man/newJuliaEvaluator.Rd
7d54348e19d830b6aced23d0a0c5bdac *man/plotGRN.Rd
6f2b8d3d8ee71a265d251d00407f337d *man/plotHeatMap.Rd
503969c97564ec00eb0448b8f80ac856 *man/plotMutations.Rd
1964ed493241b6712bd0223377b178c2 *man/plotSimulation.Rd
0186284426fd4f0b49e01a9fbe706100 *man/removeComplex.Rd
e1639809fee334df9cf1002a6efdac21 *man/removeEdge.Rd
0254a7616beadfc375775998caa5a92f *man/removeJuliaEvaluator.Rd
13254c2f02bfdcc6f3f80341b29c9c2c *man/sampleLibrarySize.Rd
0d516eddc29d1c73a7a61a024a0ea243 *man/simulateInSilicoSystem.Rd
8c3aa1d9c44052ca9d70cfc94dbf7515 *man/simulateParallelInSilicoSystem.Rd
6b788c5d5e6857d85ad28b054823e0cd *man/sortComponents.Rd
2d18992e7ea018686a0f49a05f490ddf *man/steadyStateAbundance.Rd
dfbefc8105cdc39f1060deebe27e6e88 *man/summariseSimulation.Rd
1ba11d4a05dad1b540ec2a4fb5ad80db *tests/testthat.R
4c966794c431a44e00804f662863a9e6 *tests/testthat/test-args_classes.R
2e2fb4d7def10128e4fb0b273ab3f0e3 *tests/testthat/test-in_silico_population.R
97debbca19143a630f4227db6c89af2e *tests/testthat/test-in_silico_system.R
9794eeb63d6e922016d49fc2e5b4e20e *tests/testthat/test-julia_evaluators.R
69239ceb5b7f73a65ae02f14e316a0dc *tests/testthat/test-stochastic_simulation.R
1ab005f06690b9d8e70e648da8627e7c *vignettes/sismonr_vignette.Rmd
