7abe78ca11d9a539eb6bae011413448f *DESCRIPTION
73526927dcb155f17e4cb6dd29716926 *NAMESPACE
09fe5ae3aaba32bf7cd0241223175c46 *NEWS.md
9b7bfdcc2231ae31715b1d2cf85d3ed1 *R/EMMA.R
e48f26e96eec7515a59487a80e5289f5 *R/GWASHelp.R
ec90f862e29d3cf04e04077933e46a82 *R/RcppExports.R
d6ecb628ce4e023c27fe9dcf08b00ef5 *R/chkFuncs.R
3c7460dd5f3d531b15416abdf5eaf305 *R/codeMarkers.R
0ae1dadb879657db189fe404e572b0d4 *R/createGData.R
06bf7e1e8bf320e55ba9ac963787b60a *R/createGWAS.R
b736f4d8c04834938ef33f517987c2d9 *R/data.R
b51fb343d0691f6cd8da1b43cdad023d *R/fastGLS.R
93b92e88363dcd2ee3e8c1159998c2ee *R/geneticMapPlot.R
0698f3b7cd13737a27696364b8e5d02a *R/kinship.R
22cb13e504168d3ed9c3c63056effbee *R/manhattanPlot.R
1e5147f41dd8f5e56d2fac9940123c5f *R/qqPlot.R
404b5b9e684e8d5b81a7f4e0ea117c56 *R/qtlPlot.R
fd5a17ca21dd6b91f5f625287ec0902c *R/readPlink.R
9d8d6e64e63bd19ef3083b92f3bbfdd3 *R/runSingleTraitGwas.R
e526433ac44841877679a590bb6fc255 *R/statgenGWAS.R
ba0b6ffaa3ddb73bc429556eaaed9acd *R/utils.R
5692e3a4c30c1979ae6cbde404a84b42 *R/zzz.R
d51a8aa140e60c55a0d47b420206e044 *README.md
1dda19015f0aa969acee990c150e3ac9 *build/partial.rdb
cac6071260ba624c9475072415402bc1 *build/vignette.rds
6eeeb1e94b312355adcab7f36696cc0f *cleanup
2b977f42af189241eab118af544165fe *configure
3949f5222d6ad7984a7ad88d44acd2ad *configure.ac
c87fdc93e6aa814fdcd7b2443313917b *data/dropsMap.rda
75285487b07fbf1e8fc01befc20f4a11 *data/dropsMarkers.rda
33efea5d9a898044b07d58152c3d2625 *data/dropsPheno.rda
abd2b955f70303ec30c8b44c3f932e6c *inst/doc/GWAS.R
4e819c6d36fbf25efd11d64dd44602df *inst/doc/GWAS.Rmd
5a4968698b43c338f44ac29145579d5d *inst/doc/GWAS.html
9eb5f003b27c7cd79f717bd30b7db5ea *inst/extdata/testData.RData
ea98b902fe469c5a6b6e1a28fb08e3d6 *inst/java/beagle.jar
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result1_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result2_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result3_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM1_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM2_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM3_GWARes_ph1
c71d65b5318bdad87c5682afcb20d907 *inst/tinytest/stg0_GWARes_ph1
5a7b6ee90f48d071d66410ef2d320d7e *inst/tinytest/stg1_GWARes_ph2
e805c9002d7c5c8ad0a1a163c1b296be *inst/tinytest/stgM0_GWARes_ph1
90fb81c13d0b8d0e85a73b5b7ddaeafa *inst/tinytest/stgM1_GWARes_ph2
df8bf1dd316959e239c52427ff5aa7af *inst/tinytest/test_GWAS.R
0c9355dbf23b9cc411716f0c40750428 *inst/tinytest/test_STG.R
07bf70de86f30da07a434a57f7f40fc5 *inst/tinytest/test_STGHelper.R
271b267f5db31f3f8df7a05e099882a4 *inst/tinytest/test_STGoptions.R
b842765d0b6cb05379de1b29a533987e *inst/tinytest/test_chkFuncs.R
1684eeddb2d50c2390db768a57b52fe7 *inst/tinytest/test_codeMarkers.R
cdbe8e33106298e91b64e093e50ae1fa *inst/tinytest/test_gData.R
84f0483e27db58f6c07b11c2fe08ee14 *inst/tinytest/test_kinship.R
9fd98da5059514a659054f6eeedbb9f8 *inst/tinytest/test_plots.R
017db8436ca6774844acf4fb668a8d6b *inst/tinytest/test_utils.R
143d53f8c8ff2740ce125560ed322711 *inst/tinytest/testdata.rda
6f14213ffbe8b3d364d8304157ce2b4c *java/README
d55a3f59d0cb2fdf54acbd9a3d5276b2 *man/codeMarkers.Rd
75dc8429c59802ef56507ddfcc366f34 *man/dropsData.Rd
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003315eae181b553e0c3446215a123e8 *man/figures/README-qqStg-1.png
d0c95b66f60eddf73c0a04cc897859c3 *man/figures/README-qtlStgNorm-1.png
9b39275c4a4f546de5abe846ec69c024 *man/gData.Rd
ad1472caa91cda093ff57e6783417892 *man/kinship.Rd
880c5c68f220129e86694661c91c002f *man/plot.GWAS.Rd
5ae388fbd2cec3267abc39707ab5e7cc *man/plot.gData.Rd
022d0e6c3a9dfd0ccb279f71ad14efc2 *man/readPLINK.Rd
1523c38912a3c90853d77e86265d35ac *man/runSingleTraitGwas.Rd
b2461a3325600fd0d212f19a651748e7 *man/statgenGWAS-package.Rd
f173723f573504cf7ad8352247ec99d8 *man/summary.GWAS.Rd
81bbdea2a090d3b735e0e216e5e6edc0 *man/summary.gData.Rd
9984a9660f1bfdbb1437242cca94781d *src/EMMA.cpp
9661e50f38957d51d405bae71fcce036 *src/Makevars.in
1f1c9459bfd04b8aadd22a2be152d203 *src/Makevars.win
d8150e6fb3ac320b80f2f750b640ecf1 *src/RcppExports.cpp
29f32769d6164e1c1d4e1506528bf4f8 *src/codeCharMarkers.cpp
8230bea2a40eb150c44b5d4da288c83b *src/fastGLS.cpp
768c72ab56ca4f806be7293665e35385 *src/getThr.cpp
dca120fb5d1c68c557fbd57ebd7f021c *src/getThr.h
7e6da955339718108bd7a7d09c792cd2 *src/kinship.cpp
94943cff5669015525cecaf1b43fe195 *src/utils.cpp
74d10307362652a2ed9c8580bbc3db38 *tests/tinytest.R
4e819c6d36fbf25efd11d64dd44602df *vignettes/GWAS.Rmd
71e9723a767490c1442b8b4e83b43403 *vignettes/bibliography.bib
