b244da6535b2884129f2e05f058cd2ac *DESCRIPTION
25ffec6a1db1b207b3e7ce251b35ae93 *LICENSE
000feecefb19920726729d17b54bf5d4 *NAMESPACE
83fff5d72087131aff0469612b9b5af3 *R/AnalysisSpecs.R
1645643222b677a063193bf76632b556 *R/GBKData.R
8028dc238f54f8638ff5edce7fbac213 *R/IROps.R
3dbe68c0c62dd2c87ddb9c743409fad0 *R/OutputSpecs.R
0c04dca6e6ee68800e3d85672d093edc *R/PACVr-package.R
900f8744e8c6f54451cc84932a2e6365 *R/PACVr.R
44bc1bc0acf8511e9aa895144b8d2f93 *R/RCircosOps.R
ad439744f8e1010d2a7e4ec64be9b87f *R/compileStats.R
fd162f3a114d7052fe1a341cec020f3e *R/coverageCalcOps.R
83c91f21aa9f6588eec440c3f7d62a0d *R/customRead.gb.R
6b74738e080617d5d38c17513d180aa8 *R/helpers.R
c166beeb2fe8f69ab454398ac0d475a4 *R/parsingOps.R
a81ddc48ffd15af3808b31bfe5868bae *R/quadripOps.R
dd91f75b77fb4ffe254f1394135ac513 *R/readingOps.R
3bf2696937dca78cbba79a7e86e0234a *R/visualisationOps.R
c246b38937a268a78bf71089ffc54119 *R/writingOps.R
6fce847ec3b1995db4fcbd6164ef556b *R/zzz.R
20c8d3f97d93e2e318a22508275b5a02 *build/partial.rdb
423a3b154e3e4abf3a7f7167c2902a5f *build/vignette.rds
46942c193c2af401d0e98bde2052961a *inst/CITATION
b167ee33ccf0550337fc5692818a0a08 *inst/doc/PACVr_Vignette.Rnw
457091eb7052e739fc6abd081b5e7090 *inst/doc/PACVr_Vignette.pdf
b71fcc3089f46fbc297ca01fd8bf34fb *inst/extdata/MG936619/MG936619.gb
6cf626fabf6ad25acd14365e24277317 *inst/extdata/MG936619/MG936619_subsampled.bam
d984ea31429f45f3b505fd441fcc3a8a *inst/extdata/NC_045072/NC_045072.gb
041f853d59ced193aec688eb57ea3b15 *inst/extdata/NC_045072/NC_045072_subsampled.bam
22b9f1554d77b9a073425b5d52579997 *inst/extdata/PACVr_Rscript.R
1e067d316b7520814e9224aa3e10ced2 *inst/extdata/PACVr_run_parallel.R
97348c966c4e068591b41de165f8f92b *inst/extdata/README_USAGE/Mitochondrial_Genome.R
c4c5a08b940a76f4adaaea27583b2652 *inst/extdata/README_USAGE/Plastid_Genome.R
f446f9396fcb07217454fb1f9b7d862a *man/PACVr-package.Rd
53d90415345e9bc704736049519bca37 *man/PACVr.complete.Rd
e2226e60bbf0eff6768df0ed6d3eefe7 *man/RCircos.Env.Rd
b69b8dac4a672602978294ca11e7a3a0 *vignettes/NC_045072__all_reads.pdf
53b78c2109a304f4c81d10b55dd27d1e *vignettes/NC_045072__map_to_multiple_locations.pdf
f9b41a0d3449738eb1954007bf0a23eb *vignettes/NC_045072__map_to_one_location_only.pdf
b167ee33ccf0550337fc5692818a0a08 *vignettes/PACVr_Vignette.Rnw
