44b63a2c761404426884e3b5a2d0e800 *DESCRIPTION
c4613d04ee0d5b68cee0f6fe93efff4f *LICENSE
6b5b504bec52afa75991ac47afa95ccd *NAMESPACE
0318f736195535935f77175b16b85cb3 *NEWS.md
f499d40da77c57b49f515945525f25ca *R/data.R
b9c15a508be558273c5655b76cef21fb *R/data_processing.R
298c31e1ffcc7811b05918ec8d0668cd *R/incidental.R
c64d5642e65eb88f057a8661409e4dbf *R/main.R
d2ba54a3c883287a1a55172976e38329 *R/model_fitting.R
37c199528955c28ffb223fb172251be8 *R/spline_model.R
34e23e0be6b157256c6608d026423f84 *README.md
b42b7a21a1358141920d3139747f49cf *build/vignette.rds
c8a54dc9eb401d5d0a0a3bfecc7c8b7a *data/covid_delay_dist.rda
57dbfecff63a2253dd5479511bbe17a8 *data/covid_new_york_city.rda
a9f58f9d08c4a7c3ef024ca4de48a24f *data/spanish_flu_delay_distribution.RData
ad10206c4729fa232102f80fe1147323 *data/spanish_flu_mortality.RData
2c066bca21b5e129b61f1c0e2d3cad0e *inst/doc/incidental-tutorial.R
16c7ce6ac381a67785d390fa21e526f3 *inst/doc/incidental-tutorial.Rmd
5824faef2907ad0834a0c289b899a53f *inst/doc/incidental-tutorial.html
1357842e8e331dd8ee10a48d07485255 *man/compute_expected_cases.Rd
b7480b1630d3649a3ce30013f5a4fcad *man/compute_log_incidence.Rd
d3d6a11bfd0074a696e12159658962e0 *man/covid_delay_dist.Rd
0365e526fed957d08321330142f7c5dd *man/covid_new_york_city.Rd
6248fdb47c57a39dd6ea79a6f302e9d5 *man/data_check.Rd
e41006699f4d1f4086e16682bdac7e29 *man/data_processing.Rd
846c073bac2a459542192f38ac4214fd *man/diff_trans.Rd
b7d936a881063df120f6f9bd5ee5f413 *man/fit_incidence.Rd
ed230ab1f4af1311cb33f7dd979abe42 *man/front_zero_pad.Rd
1af82049780a95085c5a545cce41ddec *man/incidence_to_df.Rd
48f4ac119c63caa28c5f38a2ee57bd41 *man/incidental.Rd
cc4d834b710f21be9116057296a688cf *man/init_params.Rd
19f5e00e471b1ff9987bae8482c7447f *man/make_ar_extrap_samps.Rd
a9361bc222603248a66b9b8eed0d9628 *man/make_likelihood_matrix.Rd
e69ae67992a9825ab5f069518c742511 *man/make_spline_basis.Rd
ab4d67bac4ac5d436536c3dc39ea27e6 *man/marg_loglike_poisson.Rd
2b8c242c017153d8d423468e432d2cf3 *man/marg_loglike_poisson_fisher.Rd
ee957660b977b9741d6f6f55fdb439fc *man/marg_loglike_poisson_grad.Rd
334c380dc81fea34651f6833eaa09297 *man/plot.incidence_spline_model.Rd
a8591fb800d4236487fcf99f3b0878a7 *man/poisson_objective.Rd
c22b0ec646e8c29c8a8b16847fdf2798 *man/poisson_objective_grad.Rd
4ffcb1789305eb061fa12f2b1a4ea36e *man/poisson_objective_post_cov_approx.Rd
cc71f6bcfef3c5a79f8732d111b3be53 *man/regfun.Rd
b4bad4e4a3b75d57f9c3f5c9e6b979df *man/regfun_grad.Rd
5bdbc5efb7b5767b1bf246d3aa9f6c75 *man/regfun_hess.Rd
21fe27fc58ba1d8728e82500a1a7cef9 *man/sample_laplace_log_incidence_poisson.Rd
67e36391112b51cf613a16e52e1133e6 *man/scan_spline_dof.Rd
f64952b8df550af8a871a80e055dd492 *man/scan_spline_lam.Rd
f9f1454120df799eacf3fd181f69df28 *man/spanish_flu.Rd
403b8ebb79c027a11d34d47f15bdba4a *man/spanish_flu_delay_dist.Rd
0ee41cff8fb2a0a826c81628175ef078 *man/train_and_validate.Rd
db9e41e81eb768005887c65641c0c3d8 *man/train_val_split.Rd
11dcf6a4e8ecd856fda7c7b4f0f3ef31 *tests/testthat.R
972cfe191f8d9522612dafb59f6515cc *tests/testthat/test-data_processing.R
fa7f61c1feda2cd0540361d2d97cef4f *tests/testthat/test-model_fitting.R
166066cc4fa7a8b882d2e10ecf9df4be *tests/testthat/test-spline_model.R
cf6836f05ca36a6588d8843904a7569e *vignettes/data/kansas_model.rds
06e8d9c8c933148907fbae5377d887e6 *vignettes/data/kansas_model_aic.rds
f7e6b432a0402d916588f32d2b52b6a2 *vignettes/data/kansas_model_hyperparameters.rds
ac203a5126f11926d6b35c5803a765e6 *vignettes/data/kansas_model_percent_thresh.rds
2e3c25d3a548087c0688da99ee701950 *vignettes/data/model_df_list.rds
16c7ce6ac381a67785d390fa21e526f3 *vignettes/incidental-tutorial.Rmd
