074fd56c01139ab95d8ded15d57f1cf8 *DESCRIPTION
231dc3b92ee4071e16f2939624fb1b43 *NAMESPACE
336aa56fa0b0570c48565578de519a43 *R/s01_all_classes.R
7ade12238c4b3ac63d4b9e1ad5f7693f *R/s02_all_methods.R
68bfcbacf2b2aae972e6a90e80e9f9ed *R/s03_all_functions.R
0a1792a55c72e1c69db857297b584e85 *R/s04_all_extra.R
d4f57fcc430478ddc208bda95260978c *build/vignette.rds
a5d77cb0afadec1f14e722d89771fea7 *data/mutSigData.rda
dc5b257b4096836bf0e2042a98ea4908 *inst/CITATION
700bd0beb02ce5904b4e28aa44240ceb *inst/doc/get_sarted_with_mutSignatures.R
ff9b4c956949bb03c59a115f8ebf65ea *inst/doc/get_sarted_with_mutSignatures.Rmd
af920bf96ca0217858ebfff173b07f7b *inst/doc/get_sarted_with_mutSignatures.html
7955a88409d171bc0ab922937d6344e7 *man/addWeak.Rd
631885977aa1894fdc1f2180e2468594 *man/alexaNMF.Rd
95cd831b638d83b3251d54b192d75f61 *man/as.data.frame-mutSignExposures-method.Rd
b47f86dcd4f5f00186794750469967bc *man/as.data.frame-mutationCounts-method.Rd
33db63ed4024885070a41ea6b13c01d0 *man/as.data.frame-mutationSignatures-method.Rd
fbdf1976b13b771a9be78ad5c0365fed *man/as.list-mutFrameworkParams-method.Rd
c530fcc8b95c40452f7fc1faca833320 *man/as.list-mutationSignatures-method.Rd
c630f95da5fdc154465e7c90ccf72b4e *man/as.matrix-mutationCounts-method.Rd
26d1da13bc8f58ac551d6d8f8bf01fe8 *man/as.mutation.counts.Rd
fc32f5d53ce27d50d2d8a16d9c919644 *man/as.mutation.signatures.Rd
ab71be13e61a986b4f49a797a2183877 *man/as.mutsign.exposures.Rd
7468cfa4e3dd2446c15360fd12b8a2d9 *man/attachContext.Rd
efc454b20628be3ca7a39644da79ff5c *man/attachMutType.Rd
2366860beb8d8d589fb45e98d76fb1af *man/bootstrapCancerGenomes.Rd
a75186c0adeebbd51ec02e9cecfe856f *man/cbind2.Rd
ccacc4f7414a73d7f62877d09ae716f1 *man/chihJenNMF.Rd
0fd285a04a72205feaf20a8ffa5385f8 *man/coerceObj-methods.Rd
e47c373286392c143c9cc7ad20c6270d *man/countMutTypes.Rd
9cbc87cd5b50c827351e69eea14affb2 *man/custom_cssls.Rd
fec31c0dd70945ae0b1b01998b580300 *man/custom_fcnnls.Rd
00eeac825f3ac71f11b27a126b14050e *man/decipherMutationalProcesses.Rd
b731077b405120d0ebc884336ab5f522 *man/deconvoluteMutCounts.Rd
3337cfbee83317c16c3fd174b745d8db *man/evaluateStability.Rd
a3511b74a683ff25aeb1bb38f458731d *man/extractSignatures.Rd
9d1f724849fb207dcb9503b477bc774c *man/extractXvarlinkData.Rd
d5c6daa916ab8ba0d9b5178076060ce8 *man/filterOutIterations.Rd
a1b52efef246c2a0dc50103bd9f08334 *man/filterSNV.Rd
340a67cdb624b7c098a6c6f3b7429728 *man/frequencize.Rd
3a9e9dacdf8f6ae3f11e59be97421e92 *man/getCosmicSignatures.Rd
66d60dc3a630eb6afd56801e7c563e40 *man/getCounts.Rd
8223176a847bf2a15585eb8d2621cb14 *man/getFwkParam.Rd
8c9450154b1d1442d6c6ba68b377ce48 *man/getMutationTypes.Rd
c8eb8dce0cd82a62175dd9a496e41d4a *man/getSampleIdentifiers.Rd
2d80935d653d0b283634064e207ca169 *man/getSignatureIdentifiers.Rd
3832e9142c0c78b63dc329f2c5116283 *man/getTestRunArgs.Rd
2696d806e55466c9db3aac9efc93165c *man/importVCFfiles.Rd
4d6f3558e781cf29995b5c8ce158dab2 *man/leadZeros.Rd
6a0a502a9e86e923588e1fb4e40a94be *man/matchSignatures.Rd
beeb266702ee90fecb4a6d52ccb4ad11 *man/msigPlot.Rd
1dd8b4ae6a5b9df6767175aedf555d1f *man/mutFrameworkParams-class.Rd
3cd0a44e955d6fb526078af55a68085c *man/mutFrameworkParams-show.Rd
c6dcb064eddd885570a7af898002bce9 *man/mutSigData.Rd
525a437afd64e91d9829ba8f6bc6f09b *man/mutSignExposures-class.Rd
e281cecc5a9161a1e30c81c54562eede *man/mutSignExposures-show.Rd
4fbf515ad50cc78306614e39ed0eafea *man/mutSignatures-package.Rd
98a32832dd7c20149e96e88e57c95ebc *man/mutationCounts-class.Rd
f029f73f32714405e511d33f4a269647 *man/mutationCounts-show.Rd
b2c832f3c70b6848b782c7b26b1fbfcb *man/mutationSignatures-class.Rd
0775fe5144434d8edb2a1a186c0578fd *man/mutationSignatures-show.Rd
f66458b1f98a6e16044f334ca49f9fb6 *man/plotMutTypeProfile.Rd
42ec9f36e77c64776c8dd1aaf5467242 *man/plotSignExposures.Rd
ed2e0af49d01190a3fb41971c2365057 *man/prelimProcessAssess.Rd
2c91ab361601e8e95a1774f555099481 *man/processVCFdata.Rd
494f9106331a838b65f7545ee2ce9589 *man/removeMismatchMut.Rd
4cb4bf680d1ee5827d4c909c38cec967 *man/removeWeak.Rd
53ac05e38dd0e6b6297a84da7a4074fd *man/resolveMutSignatures.Rd
23f6df8c318fa56fd69753de4e994863 *man/revCompl.Rd
1220a8a298c22713f9d5a7786edc4f4d *man/setFwkParam.Rd
0a97c7989e131553e01f178bc82b5e44 *man/setMutClusterParams.Rd
30236f1cd5c88425cf5e6630e1b090e5 *man/silhouetteMLB.Rd
8d920823b333d46d1943ca985e08d516 *man/simplifySignatures.Rd
ea366b9375fe12651a6137df4ee7dc90 *man/sortByMutations.Rd
1877a8f60f0bcc0296ef12929de34d16 *man/sub-mutSignExposures-numeric-ANY-ANY-method.Rd
b5a10c9434d1093823e049f899cef270 *man/sub-mutationCounts-numeric-ANY-ANY-method.Rd
1a7da8e2c08e4030ca9485f2d9fb853e *man/sub-mutationSignatures-numeric-ANY-ANY-method.Rd
3d0bc0d0916e49af24766900124443b6 *man/table2df.Rd
ff9b4c956949bb03c59a115f8ebf65ea *vignettes/get_sarted_with_mutSignatures.Rmd
