ce7d9cb33a09d8331c0c01f9a3f5f41e *DESCRIPTION
05e0d6c01b4afa43840e7c1742651fd0 *NAMESPACE
93ca01cef6a8daa4656c53e8764f992f *NEWS.md
3ddafeae094491cc03c143b0f681c6e4 *R/CSEGriskfigure.R
7269341eb976fc87b790d3737ae60956 *R/CSEGtmufigure.R
28c5d877ef334af4c92b3c2cb4d41ca4 *R/MARSS.R
80e8366568a3f6976f2ac31579a761b4 *R/MARSSFisherI.r
2e020fc1c8c8debfc1251460b2e198ee *R/MARSS_dfa.r
6d6f2f0b285ec04c108f52c765613360 *R/MARSS_marss.R
c97f365f9aa98502fab167d9448ac222 *R/MARSS_marxss.R
615c75511d48e56bd807fbf695341f70 *R/MARSSaic.R
838c0401214692dc58cf46f28eedbd9c *R/MARSSapplynames.R
f46d6b9d4fd5d590e857c3fcc5cd7dce *R/MARSSboot.R
37cb072db9c09edb9bacc5830e2ccdc7 *R/MARSSharveyobsFI.R
51a44df83a9acbd24eb9888c16b54e11 *R/MARSShatyt.r
9a49d281e9d80a5523e7eadb78a232cc *R/MARSShessian.R
f968dce498583846a55e295fe2f1d785 *R/MARSShessian_numerical.R
4a19e7c99dca3ffbf407c929810bb1b2 *R/MARSSinfo.R
2918e20e995d57f2ae5a8e3b9b6ef8d9 *R/MARSSinits.R
d25162924b8ae96c56f20750eee96393 *R/MARSSinnovationsboot.R
772afcdc909ea3e71e2fefc3af9fb510 *R/MARSSkem.r
42a3f8e2bc312f10ed7e17dda25e5348 *R/MARSSkemcheck.r
cbc96cae0e73e021ad6df953f124ddc0 *R/MARSSkf.r
5d1a2345de2f0b1e063a1ba10fbf95ec *R/MARSSkfas.r
facb444a6cce729146d5db8e3c40fab1 *R/MARSSkfss.R
9c0f4d5149f3fc306c320485c313d6a0 *R/MARSSoptim.r
63bbe0a7700d2165456331714f427fe5 *R/MARSSparamCIs.R
b858a32e31fdbb45e86e3aac896fcb74 *R/MARSSresiduals.R
c1d9a1fc66a993d3e34c3f9c3eafefc2 *R/MARSSresiduals.tT.R
a82419ee2af609af4ccfa5deb51dcc56 *R/MARSSresiduals_tt.R
71b390c6ea5e01bb3b442652d5d14514 *R/MARSSresiduals_tt1.R
295ca5fe2d5257a56e9f7e08b2c70052 *R/MARSSsimulate.R
165260c3b21e4095fd5c5f1b2dcba986 *R/MARSSvectorizeparam.R
034fad7ea355055c8fba8221295a47ef *R/accuracy_marssMLE.R
fbb7d7c3b9690650f6824137d0137871 *R/autoplot_marssMLE.R
7d2cb8cccc95654865dc23faf6713bb5 *R/autoplot_marssPredict.R
79b6fbd2ee5200aa11985a60adada27a *R/checkMARSSInputs.r
c0adfa9a98cd04562046fde02306a501 *R/checkModelList.r
8f8e4676bfef6e98b000c150562a0c71 *R/coef_marssMLE.r
5026f5ba35172c39b4dafe7ded67b206 *R/describe_marssMODEL.R
200ada91fe35a2f87a50d39f729f467b *R/fitted_marssMLE.r
3b20a01bd4a87c20dcb52defa6410ac1 *R/forecast_marssMLE.R
3bd0fc3cfa503737792001f2ee3339bf *R/glance_marssMLE.R
9295f9d4ce27b62aa0a96fe0a95e24bb *R/is_marssMLE.r
10a73b2f6eaa7a8800f437b909c62804 *R/is_marssMODEL.R
0168fa6ccf246c5defccb0f61b45f4b0 *R/logLik_marssMLE.R
3b616a155ebb347b9c43f8b37f9c2e6c *R/model_frame_marssMODEL.R
93a8f4bfd43986ec23c874cdbef9adb2 *R/onLoad.R
3b40c662ba63d4446f42bf35b30b75d5 *R/plot.marssMLE.R
424111281c7bdb23f1f816f98c996426 *R/plot_marssMLE.R
ccc49210c6d33c062b2026e767f3d404 *R/plot_marssPredict.R
306bfbd1a643230c836485e717e7c8d6 *R/predict_marssMLE.R
82429ec51524446bbbfd416dbe68e793 *R/print_marssMLE.r
b1903ad3d8c961ede561485b77d21fea *R/print_marssMODEL.R
c5881117c4d1f366e09066759ca43e4e *R/print_marssPredict.R
5c430539c62b4b62299a8c1fdc685876 *R/progressBar.R
2641931797140451e8a3dc2bbd429dc1 *R/residuals_marssMLE.R
d75b6a5269089df65f00ad857e8ecfc2 *R/summary_marssMLE.R
ea41c0c5b01de477697f29ec6914cda2 *R/summary_marssMODEL.R
c92f1622f6603f190172e054bda0b038 *R/sysdata.rda
e060cfd3026cf8eb71f01dd6af673798 *R/tidy_marssMLE.R
b9601f0e4bb4542d698d58f60f4f4eb7 *R/toLatex_marssMODEL.R
04a74948050a9f0adba1878e2fc49c79 *R/tsSmooth_marssMLE.R
adf16b6f2b99943d8f4731f561d40cf7 *R/utility_functions.R
70b91ab6e2404a5e115101594f8301cd *build/vignette.rds
40e919bd17df7ed8530c6bfced827ff0 *data/SalmonSurvCUI.rda
6a368bb265850d260a4ade1f5acc2ef0 *data/graywhales.rda
9687fd26d1c7e37deb713b5d15c39d84 *data/grouse.rda
120adc7ef4f2f094afa36bb345c1fc13 *data/harborSeal.rda
4dbccc6fbad7f2d5e21cee4d4f9962a4 *data/harborSealWA.rda
0110004df78fb4604ef464cced89f5cc *data/isleRoyal.rda
0ccd31eb359d325c51fca61107a40d4d *data/ivesDataByWeek.rda
54d4546697857f1217aafa15f4a93557 *data/ivesDataLP.rda
b221b6199191929a3e9a7308b024dff5 *data/kestrel.rda
64af6856811e7129be051c64a4c305ff *data/lakeWAplankton.rda
3ac0630c867dd992eaa9e1a3629261fe *data/loggerhead.rda
7461688b324fce41b713db0d90dbc451 *data/loggerheadNoisy.rda
7dba40d4261dae2282fce64e7a4885ee *data/okanaganRedds.rda
9e1f016e8a44722b82c4537c7a4c8bb7 *data/prairiechicken.rda
739f2f53458171d2566e20a5336345d1 *data/redstart.rda
59a0eba4833c80a67f0c0eb401578cb5 *data/rockfish.rda
ff1f8311cc96d406be8e6304e775d1ed *data/wilddogs.rda
02b9f3ef7b2d17bb305551716ff3cc0d *inst/CITATION
b642a6bf8722f2686bba0f7686fa6f7b *inst/WORDLIST
4c29321bd0fdd1b4c40995d849265185 *inst/doc/Chapter_AnimalTracking.R
f327fb003cf97eb185bd6eec3f2a2002 *inst/doc/Chapter_CombiningTrendData.R
a60c792601fc125ecd33d89221bb92b6 *inst/doc/Chapter_Covariates.R
439a2d472af3ad26057c887a8e6c7655 *inst/doc/Chapter_DFA.R
f1777d9b69bc1506489c9499821bd0a3 *inst/doc/Chapter_KFAS.R
eba7ab57849dac4e6086b91c1277bfec *inst/doc/Chapter_MARp.R
fa2882d1f5bd4b28aa991db737e0988c *inst/doc/Chapter_MLR.R
ca67052be85899de2daeeac54bafb839 *inst/doc/Chapter_PVA.R
bbd606bdab44b88cecb400cc011c9062 *inst/doc/Chapter_SealPopStructure.R
3260f44f4f732f1874ad865bc9077246 *inst/doc/Chapter_SealTrend.R
72d1ff692bcdf899e4be24a9e8004ea8 *inst/doc/Chapter_SpeciesInteractions.R
735c945b795519f7bb9f5eb5674ccc2c *inst/doc/Chapter_StructuralBreaks.R
56eee61e214405a3e1fd1de943a3ec36 *inst/doc/Chapter_Structural_TS.R
19ba3f06fe5530895c6b094b6f81124a *inst/doc/Chapter_UnivariateDLM.R
dfe06344bebea2bdb633512c554216d5 *inst/doc/Chapter_inits.R
0f7e01db843c03b4bc377d8760ac411e *inst/doc/EMDerivation.Rnw
bf42e9acb6cd77972a84ccf6cfdfbfac *inst/doc/EMDerivation.pdf
c1704616fb28897822cd816b3f9012d9 *inst/doc/Quick_Examples.R
5e39748d4cd5ef9e7cf7455bb47113be *inst/doc/Quick_Start.Rnw
04ebb36a05510a6703dae3eda93cf001 *inst/doc/Quick_Start.pdf
eadf6d7eae8e314749ba7deb1777f3a0 *inst/doc/Residuals.Rnw
6a31c698c7131ac6a69740350100cb78 *inst/doc/Residuals.pdf
732bc0ece0f3a7e1d4b72555e929216c *inst/doc/UserGuide.Rnw
c6a41662c6b1b0fcd8e1e27c2aa8dd5f *inst/doc/UserGuide.pdf
53f2fd69e6afddd7bfd91ca2b4765ab5 *inst/doc/index.html
d44726bc2a310154b78396157aec1af5 *man/CSEGriskfigure.Rd
2be9f5557d5b8fdba259d1dae9474886 *man/CSEGtmufigure.Rd
157d4d22925a904e54acf62b4b79da04 *man/MARSS-package.Rd
0dfb95c1e95046a3905a62fe84af3e8d *man/MARSS.Rd
6be77e13ddc431c550b5442da40a0340 *man/MARSSFisherI.Rd
1a6e3e8c09fdb99e5c63e15fdd293681 *man/MARSS_dfa.Rd
cc96328340c47f6e7b6fa7218b4fecf1 *man/MARSS_marss.Rd
77b52bcde721bb8fe34134c56e52d382 *man/MARSS_marxss.Rd
a8f00e8fd5151fd03f6f548792f4dd48 *man/MARSS_vectorized.Rd
0263c59bd13ec4b69810978c7f8ed4d3 *man/MARSSaic.Rd
421987076706f15b17d1080fe35d8e4e *man/MARSSapplynames.Rd
423941058f84c7a7cded7d5d25b697c5 *man/MARSSboot.Rd
be8351d7f72531f26e0801d8e34d26f6 *man/MARSSharveyobsFI.Rd
e6bfe39bc2e72e00f6b0f0a9a055d6f1 *man/MARSShatyt.Rd
f0c048cce68a5f8af1ba3a1279aa2dfa *man/MARSShessian.Rd
e21065c87cd079c2149ecc86632e929a *man/MARSShessian_numerical.Rd
ba4b57b539277f35d0b9439b2decb51b *man/MARSSinfo.Rd
2287146cfa42c6389e163256f3ebb37d *man/MARSSinits.Rd
132e0987cc8a87ee672d95bde6845167 *man/MARSSinnovationsboot.Rd
05427847c0aa0fc72ad9928be667fc26 *man/MARSSkem.Rd
a28dc685d7abbd4732f18ee13a08ff41 *man/MARSSkemcheck.Rd
a438dd1a2a49df325a43f6b7f95e6a01 *man/MARSSkf.Rd
87caa135bffbbec36df76a892bfeb0dd *man/MARSSoptim.Rd
726bbed3e5cc69711d0ce71c919b4675 *man/MARSSparamCIs.Rd
ec38e568154fde756baa0f0bf3142f4b *man/MARSSresiduals.Rd
bedcb8bc9cba16917d4b27d856c404e6 *man/MARSSresiduals_tT.Rd
d965ebc196e16c198027f72bd5b21856 *man/MARSSresiduals_tt1.Rd
c33a6de9163abdde13ae82d929eb4dba *man/MARSSresiduals_ttt.Rd
7a11f2e8a3a1e3cf2c51346064ad4346 *man/MARSSsimulate.Rd
a0a2041fc8e49c7f20ae8e466168b73a *man/MARSSvectorizeparam.Rd
2a5eb245eda4186ab6decc626d4f806a *man/SalmonSurvCUI.Rd
47756ae4ad0f506d059370f2d7521b1e *man/accuracy_marssMLE.Rd
57484da2d6de20819d35ff55a9d1e8f8 *man/allowed.Rd
faa0f6e232382598b300e60d57ff2619 *man/as_marssMODEL.Rd
5acec8ba8c2ec85f6a572f048e2dd878 *man/checkMARSSInputs.Rd
a631e7a9f6a2105c59a36fbf5155cb04 *man/checkModelList.Rd
3d37b9db11ffb6c7c79f8b9ce9f4069e *man/coef_marssMLE.Rd
06e9fdbbafcf69f77246141c044c1223 *man/datasets.Rd
a5bff42e9a29faa24c99343df45825ff *man/describe_marssMODEL.Rd
1090da2bd2e0b3d45a8c0b4c1836b909 *man/fitted_marssMLE.Rd
81f51cf49e9bd9ad40214949a8b4a6b6 *man/forecast_marssMLE.Rd
760c30a0b91042e2e0e13f1dde397c81 *man/glance_marssMLE.Rd
98feafff63583f4707d1530ac9e99846 *man/graywhales.Rd
d41656e803704f37448ccebd93bb4bbc *man/harborSeal.Rd
50376a0e724b11190db7c44a28bddebd *man/is_marssMLE.Rd
2f65b5f8c726cb18081f7511aaed92ac *man/is_marssMODEL.Rd
05094ade35dafd6a6d30260107751335 *man/isleRoyal.Rd
615c947fc71e9ac88f8fbd7245d93309 *man/ldiag.Rd
bc5faa78f263f3e7634bb5963dbd7969 *man/logLik_marssMLE.Rd
218caf749372dd2b36947b81b87cc02e *man/loggerhead.Rd
449e14888cec67f7bc134f060913dd4a *man/marssMLE-class.Rd
076de68fe9ca465beeca41c86eb0a41d *man/marssMODEL-class.Rd
c0b86cec46f965e0fe5a7dd10dee07ef *man/marssPredict-class.Rd
fca841c1d275e9ddf11eb3fa4926fa45 *man/marssResiduals-class.Rd
28bd859377a73c185efcd1ee260440c2 *man/model_frame_marssMODEL.Rd
e0113ea20c3fbbfc26a74ff11a1501f7 *man/plankton.Rd
40ef39ea704044c504e1c7842d9a8a1e *man/plot_marssMLE.Rd
dded97fd9b25517b954613c9bc934c28 *man/plot_marssPredict.Rd
bebbadf4abe39a5a3f712014d365f0f3 *man/predict_help.Rd
e409e1bcaa7c993d18309ac751616ddb *man/predict_marssMLE.Rd
db932b2e7e859e3215c85558a5a7da06 *man/print_marssMLE.Rd
942e3ef9428995160cde90f36f292e87 *man/print_marssMODEL.Rd
262235fd1065dd147ec560e3de518118 *man/print_marssPredict.Rd
63fabc120102370347fe3a6b763efef8 *man/residuals_marssMLE.Rd
e1ac32a00c8761d87b38efe9ebd739f0 *man/stdInnov.Rd
bd586df9641246363419f272159f9e38 *man/sysdata.Rd
902894277c4e348b946c6c34fc679c01 *man/tidy_marssMLE.Rd
501bbc0667f6b9c27b34e0ee3e2899f2 *man/toLatex_marssMLE.Rd
3be9e2b700fdee178882b45105fd62ef *man/tsSmooth_marssMLE.Rd
d0586dbdbe21995d4244944d75620f90 *man/utility_functions.Rd
38d08b191f7d5b6c925ec85b8e32671a *man/zscore.Rd
0f7e01db843c03b4bc377d8760ac411e *vignettes/EMDerivation.Rnw
cc333d9cac826e932995d6b10915a564 *vignettes/EMDerivation.bib
5e39748d4cd5ef9e7cf7455bb47113be *vignettes/Quick_Start.Rnw
eadf6d7eae8e314749ba7deb1777f3a0 *vignettes/Residuals.Rnw
732bc0ece0f3a7e1d4b72555e929216c *vignettes/UserGuide.Rnw
