648f1ad5e3a7bc3e920407b95686c3b7 *DESCRIPTION
7bf1ccc26e5826ec963a19aff15d41f7 *LICENSE
1b3865fb95267f0a5e6272fba836fafd *NAMESPACE
9713d4e6c2f1dfa53b681fae1a1202e8 *R/EMM_functions_cpp.R
fdd6c8337d500a5bae4c2f8d31c7e3d8 *R/RAINBOWR.R
5c84a67f2522474795a481ad78f485a1 *R/RGWAS.epistasis.R
fdfbb6466a9b05baf65dcf71c2cfe6b6 *R/RGWAS.menu.R
700bb1eb8819b521e8ebdc95f0a0392b *R/RGWAS.multisnp.R
6b6d516aad94638acd923ce90ab85772 *R/RGWAS.normal.R
3e80ce4b0e87c2e1f57ab04196fd24a9 *R/RGWAS.twostep.R
f3b2516ee259c201e32aebfe0489ea3a *R/RGWAS.twostep.epi.R
3fae5741e4163d2d13f86d81133eed70 *R/RcppExports.R
35b871b4a75d438a181cc4c4732d1a2e *R/Rice_Zhao_etal.R
df429b1913154d233f3ccde96623eed3 *R/Rice_geno_map.R
03df50ec745fd846fd1c3436f17e0419 *R/Rice_geno_score.R
33af6bcfd26b3b7e49dc438e5bfacd0c *R/Rice_pheno.R
da5e086e0de58dffa8e817ca56eb63cb *R/SS_gwas.R
4e82f02a9bdfb28d9b28a8a31ca916b0 *R/examples/EM3.cpp_example.R
138d2a045a91ac653fd5674900152079 *R/examples/EM3.linker.cpp_example.R
d1ea7ae9ccef74c9999ecce486bb62bf *R/examples/EMM.cpp_example.R
42f6de036e01218d754360bba0597a36 *R/examples/RGWAS.epistasis_example.R
8743525c0a7c88da3d7d744758b35a90 *R/examples/RGWAS.multisnp_example.R
490e7bced646bbe501965c7f71dc966a *R/examples/RGWAS.normal_example.R
6b6a6e089497208a44d37ecea61b1659 *R/examples/RGWAS.twostep.epi_example.R
29f70eb4f8b81f084ca1494458b96c32 *R/examples/RGWAS.twostep_example.R
dce4ff0c7d355ddbe2e768ca3934fa1b *R/functions_for_RGWAS.R
77cefcede80e5d9afdda195cb40008a7 *R/genetrait.R
3c33d9a5f6754280a773603135afdcea *R/other_useful_functions.R
fea1dab40c907e18fe6b78f2622afa64 *README.md
6160d581fe10d9d851a05058684d38ca *build/vignette.rds
31348c29e4ffc7dc523c4248f3df0b72 *data/Rice_Zhao_etal.rda
7c22e8bd5c047dad605d2b0b401627ba *data/datalist
8eb3b4de1fea9417be9185fd741eb1da *inst/CITATION
4648a5b0f65420b514c57a62c7a37e4d *inst/doc/RAINBOWR.R
e005f96ebc2f69531881f977ee716a4b *inst/doc/RAINBOWR.Rmd
a4930e88292b26840b52c507b2835952 *inst/doc/RAINBOWR.html
fc43588133c424a67ff4d5ecce2267a6 *man/CalcThreshold.Rd
ba99a9e9a902973c97d31f8fb2644c98 *man/EM3.cpp.Rd
fa18fd6a4511f8791289e82b489e0a7c *man/EM3.linker.cpp.Rd
66cac2e8daa124981882c3ca3e8d75b7 *man/EMM.cpp.Rd
23243f44e3827c78d5127e6adae99b8a *man/EMM1.cpp.Rd
a3623fabb2886c582e12f83f5d5df0ba *man/EMM2.cpp.Rd
619c5254bb6d054c931231378e944a5c *man/MAF.cut.Rd
ba3a0e0937895b07ea1469925a20ee38 *man/RAINBOWR.Rd
30c4a140ec723fb16cabd4eef0fbf0ce *man/RGWAS.epistasis.Rd
3f95c1d135bbc3b48bfdc72b5ea1d29b *man/RGWAS.menu.Rd
aa0ee102ea191e3298316711a6413862 *man/RGWAS.multisnp.Rd
b5cd80ac6b79ed98dee4105fce000881 *man/RGWAS.normal.Rd
562417f2b0e0f1bfec1268920c77c333 *man/RGWAS.twostep.Rd
a8c99fb339f09b48541bd46854a1ff82 *man/RGWAS.twostep.epi.Rd
8a75ad127bf208835910f6af27b91b1b *man/Rice_Zhao_etal.Rd
104280b9bc00f590a0b6d39269ec45f7 *man/Rice_geno_map.Rd
a610b5f25f78bc03fde6365a61fbdff0 *man/Rice_geno_score.Rd
6aff726f13a3be7a488fbbc9968f12c4 *man/Rice_pheno.Rd
5c0cc8dd69a4669ffc72f6b14de59863 *man/SS_gwas.Rd
d2b00bec97db2b56e92e856810f46543 *man/See.Rd
23beb8274392b21246665c8a209fc461 *man/calcGRM.Rd
b82b49da99fb39158681e76c67291ad2 *man/cumsumPos.Rd
00ee68461661141ac35c2337d0f8749a *man/design.Z.Rd
c6e24c4e00cebd66f79c20c726a15186 *man/estNetwork.Rd
41d2a74658d0982b4f6e951de491e862 *man/estPhylo.Rd
1b5d7658f519b40d0a72e724d94a20a8 *man/genesetmap.Rd
f0930f418d8f2081b0bf1974fc13c5f7 *man/genetrait.Rd
dee7b90441aa20d5a7c84f0d09a377ad *man/make.full.Rd
f8cbe5a273a9224bcfdf28ad16e9e5b4 *man/manhattan.Rd
e495937f8a4a321a219fa6aa80cb7a8b *man/manhattan.plus.Rd
edaa5b668ae14353ed1f245f5b746920 *man/manhattan2.Rd
74cf4627b9ac80df4e550659ac82bf35 *man/manhattan3.Rd
d3bfa0bc2a7eb245148af48ca0b01c7f *man/modify.data.Rd
12b74c263990b65ee5828bc7b1c593e9 *man/plotHaploNetwork.Rd
aac6fbd74a8c11378a8660f5bc6254f7 *man/plotPhyloTree.Rd
98440e83f68a599e7a9532ba64047e1c *man/qq.Rd
155437afeab245493676ca1272a67f85 *man/score.calc.LR.MC.Rd
1dc4c4fb51a1c5e035154765718f68ab *man/score.calc.LR.Rd
51fc7f9ad10be433de40e89328804520 *man/score.calc.MC.Rd
577290ea72654c739e48abe7d1235140 *man/score.calc.Rd
e02890fceb08d0f88c7d3f05557b42b4 *man/score.calc.epistasis.LR.Rd
d5f8440d3f77017acbe63fe5e0996ff1 *man/score.calc.epistasis.score.Rd
55c9e609230e48fd58acc4d23338ff4a *man/score.calc.score.MC.Rd
4415e2d61da7e06a2130eb944b68fb9a *man/score.calc.score.Rd
f31871427ffdd3f28545b5415dc0b707 *man/score.cpp.Rd
31dfb8875ad37cef92160006fedac526 *man/score.linker.cpp.Rd
e933603db534dd978f8a364ce4d7eb78 *man/spectralG.cpp.Rd
360bba514cc60960abf248914906903e *man/welcome_to_RGWAS.Rd
9c749f17a28fb67dbb09e49ef70dc35d *src/EMM_functions.cpp
c50d9de009861bf6f34426d4f654120e *src/RcppExports.cpp
e005f96ebc2f69531881f977ee716a4b *vignettes/RAINBOWR.Rmd
