e1bcc3dbd74c77fb8f6f73d8f4a89da5 *DESCRIPTION
e1e0c6ba9f052b3cd99ddb3ee932572f *NAMESPACE
51b62563266222129bcdc1c6a7fc5dea *R/LogLogisticRegression.R
ca967331d6d7b011655661b842bbb319 *R/SanityCheck.R
70a3e43a99253ecf3a38a3348ce59c60 *R/ToxicoSet.R
9ff161d35b22153174a28d0b6d80c219 *R/as_tSet.R
a923237449129c7f34e55ae07269f4f9 *R/computeAUC.R
652667e9ac0381934fc0f24502df76c0 *R/computeDrugSensitivity.R
38a238ab9dfec8ca2f71d1200ca832ce *R/computeIC50.R
6dfee029e9cc37dd5a2a0e91e1d384a6 *R/computeICn.R
9c0865325722569431aae1ec0f123496 *R/dataset.R
fb2c25a35c7eea525b2d86df05930ac7 *R/dmedncauchys.R
bd429b3fc705f363957a94d9fa387f1d *R/dmednnormals.R
399f5e989e36a257b8439fe1d67e5bc9 *R/drugDoseResponseCurve.R
3347cd1b25f86890f5bd3c9b38015e5d *R/drugGeneResponseCurve.R
be48252a6764761ac07624057322680a *R/drugPerturbationSig.R
80bc7c2262fa093b5f3a536a743fcdb1 *R/drugTimeResponseCurve.R
be9dce5bdcdfbf9291cfe8d45e78c81b *R/geneDrugPerturbation.R
93e0d8a8cdeb97c5149df0e491e21d5b *R/geneDrugSensitivity.R
4bca0a58ef94eac6107bd263c933ad8b *R/paramErrorChecker.R
beed65153cc5f6786771f870475fca63 *R/rankGeneDrugPerturbation.R
085ee3f8a14f6f70cbfa48a32a21d73c *R/rankGeneDrugSensitivity.R
daa9e9a325aae39f46b893b77f0b4e59 *R/saveTSetAsGroundTruth.R
a3b0e20e76bc0863da7b259dd84e6463 *R/signatureClass.R
becd5017b295f3bd5810537fcb01e79a *R/summarizeMolecularProfiles.R
68f832f10360f033a860290b0da83a1e *R/summarizeSensitivityProfiles.R
2e237e852ddb9f1365cb99fbbc675bb8 *R/theoreticalFit.R
1c5164028b5657a2a02ab8a1f9356ed9 *README.md
7c6a88bea0cc8fc27eacb8d1839d6988 *build/vignette.rds
854f6fcd473ab99c9e69d31555fc68ab *data/HCC_sig.rda
8660ac5df8961d860c39f16f7c9d180d *data/TGGATESsmall.rda
429a39fb7e60c430fc96c3d1745c9ebe *inst/doc/toxicoGxCaseStudies.R
f835ceafb6ac0b9372e35b7ffeebbaef *inst/doc/toxicoGxCaseStudies.Rmd
f498285fc76779581d68c25f2619779c *inst/doc/toxicoGxCaseStudies.pdf
a93caa666db4b00789f6c35cf45c9253 *man/HCC_sig.Rd
0699cdb0a1cab712c19f9684c40a0ea0 *man/TGGATESsmall.Rd
8975fa5e11c6ea0bda1dfe97f75c3e15 *man/ToxicoSet-class.Rd
195dcf366d525a768dfba16c0981f894 *man/ToxicoSet.Rd
3c613da9e0d572c7e322abf4caadb144 *man/ToxicoSig.Rd
59e0c1570eeb250821266f8a276c25e1 *man/checkTSetStructure.Rd
d363d3f3e275aa74bafd63e9df32585a *man/computeAUC.Rd
ed902f2e6b1fac6296b16078d6ad332b *man/computeICn.Rd
24495f252dc93ddbbcad50781a455920 *man/dim-ToxicoSet-method.Rd
58d2fe4e862e9928030a443259d385fa *man/dot-saveTSetAsGroundTruth.Rd
acd383b3da27b37887bf2204c00d60df *man/drugDoseResponseCurve.Rd
2967d9792b9d6acad625ec049fe99078 *man/drugGeneResponseCurve.Rd
1dcd372553f828fa25a7f93d0cca497b *man/drugInfo-set.Rd
624b508ed9501153786291936940ea37 *man/drugInfo.Rd
743ce27e130d5af86b5b2fcd9d44ca8e *man/drugNames-set.Rd
3faf8d8c2bbf32e7554da91246e023d7 *man/drugNames.Rd
9160ca5e02f21ae3a489dc82ae07cdd5 *man/drugPerturbationSig.Rd
749bf751022065899c160e31694b077c *man/drugTimeResponseCurve.Rd
9b422ec1ca452d71b4515870d32b4d73 *man/geneDrugPerturbation.Rd
ea20f5204158286ebb0ef06c1c4943aa *man/logLogisticRegression.Rd
4075343bd5854e55cae0ca029dba90a5 *man/mDataNames-ToxicoSet-method.Rd
729e23b41c15ca0b79a45ebe4b503749 *man/names-ToxicoSet-method.Rd
df6b508da3e1f0acf09415866c4c0c3f *man/pharmacoSettoToxicoSet.Rd
4cdf87e092ae8e4b003fb92f978f0033 *man/rankGeneDrugPerturbation.Rd
2ac3a930600d0eb125e1f0dc2235a2d4 *man/show-ToxicoSet-method.Rd
ed5094e6ccc5985b4aa3e0b077eb425c *man/show-ToxicoSig-method.Rd
6a48aa460f3b38467d9adae713d3719b *man/showSigAnnot.Rd
61ccc1e1798233f76e47b7fccc82fbda *man/sub-ToxicoSet-ANY-ANY-ANY-method.Rd
a3f77d9fbfee50f8474e7cd1e5c9c201 *man/subsetTo.Rd
1afbdee496842bd803df1116c047b678 *man/summarizeMolecularProfiles.Rd
a622ccc16bb8d75933f11876065a87f0 *man/summarizeSensitivityProfiles.Rd
2881dfb10ab8e1fa0d6816388999e19c *man/updateCellId.Rd
648baa9743ed1f7e5e727c6a6823741f *man/updateDrugId.Rd
91539aeba57721825850508b3373bf8e *vignettes/ecology.csl
4d3f403672b3391e0d5d34dec824b2d2 *vignettes/header.tex
beacffce0e61028165d34735fb00d9b8 *vignettes/manuscript.latex
f835ceafb6ac0b9372e35b7ffeebbaef *vignettes/toxicoGxCaseStudies.Rmd
