b784f646ed9f47a3c7e3fe4a14f221eb *DESCRIPTION
db97f398e901bbbf2e78f8b5876f9366 *NAMESPACE
9a21aac14e4cff62cccaab338c26b7f1 *NEWS.md
84208513a73b5fb95c707d52aa3c1cb2 *R/RcppExports.R
93e2e0cfbc87107b51a6aee39be43fa0 *R/adjclust.R
b08f9ae47e673049a61d5b0b1c3edc0d *R/buildHeap.R
bff8db81110cd2a129000dd5e167348e *R/chac.R
43f3975406b78511a3bea060897a5a9d *R/helpers.R
9d2633d135634142620db47f711cd93f *R/hicClust.R
794ffeeaf3c5332d55f58b414632b332 *R/plotSim.R
2773d349033325cd7b856ea440eca513 *R/snpClust.R
febeb93ba870da2bb665ec663c1937ec *README.md
8faf250d78a120ba4c7ea2186efddd24 *build/partial.rdb
23a3d4c446120211fcded5a2ad39c01a *build/vignette.rds
ff2e48089e4adf9aa4458e5f4e47e82b *inst/CITATION
b15293fdc09019ddcc89aada210896cf *inst/WORDLIST
b253ab7270e1b2645f6aef99f9f096d4 *inst/doc/hicClust.R
a053f2db6cc09f6e532cb836ec4b1c07 *inst/doc/hicClust.Rmd
3917a1936eec583cf46bba91c0cecf3a *inst/doc/hicClust.html
7341d2906511fc6825b4d33b7a695329 *inst/doc/notesCHAC.R
9fcc7d21a200d49aa4a705c0416d8f63 *inst/doc/notesCHAC.Rmd
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50f644a4571e18e1ffba23eec6e65414 *inst/doc/snpClust.R
36938884fab89261f065da8ba73df071 *inst/doc/snpClust.Rmd
4b4297929b44f6b731f45f731ee3841f *inst/doc/snpClust.html
dd6726c6c4b30f3cea804183395128eb *inst/extdata/hic_imr90_40_XX.rda
1e8659d605ac23dbd53c9b00d95bbb52 *inst/extdata/res_adjclust_0.3.0.rds
bd492a22b4201740430f97be6b6c45fe *inst/extdata/sample.txt
abe469addd68c05b93241b7ddf51ab7f *inst/system/createExampleLDData.R
8a7f67643f909f889d8f2efcf825ca00 *inst/system/create_hic_chrXchrX.R
ab247bcc85e5b115f6bb89fbde548770 *inst/system/create_prevfit.R
a9e9a9cc3b3c547b35b7eb4d4036b32b *man/adjClust.Rd
58012d3169795ee067fb4a7646229653 *man/chac.Rd
06438839bf6e9400e59dbbb8912788c9 *man/figures/README-adjClust-1.png
162fa8c77e6216fac3af0776e607aa25 *man/figures/README-hicClust-1.png
c00ae2ab1445e966f8304ebdb80a1661 *man/figures/README-hicClust-2.png
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a24be731ab7a476759379c053feded40 *man/figures/README-snpClust-1.png
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74d070a229f90e2462cd6ead932d8ad7 *man/figures/README-snpClust-3.png
3ed8e614783e5901a9881615936d3d0b *man/hicClust.Rd
05217c9de802f182c8a89457d5053aa6 *man/plotSim.Rd
e5bbb174601eb059812484c1e495b965 *man/select.Rd
6fcb32929007b8720337975ff0045f83 *man/snpClust.Rd
6efce01aee1390922463a9ec611f8afa *src/Makevars
e150cdceea1c63a4c30e42fec8cde252 *src/Makevars.win
c7340b5f5b1177fec992a8272840f425 *src/RcppExports.cpp
57e5e878d0a729c4f0cb829663b12f2f *src/adjClustFast.cpp
d4925a854a935f765b3d84f15772e8ea *src/mainFunctions.c
4543c7812c549c8a643d02ecafc49922 *tests/testthat.R
469e7af7db925fe06e3715da4aaeb3d8 *tests/testthat/test_adjClust.R
8e01ff230941a68df4f5facd81e95e00 *tests/testthat/test_adjclust_equivalentTo_hclust.R
8d35f7345b10dffa75efc22944568900 *tests/testthat/test_adjclust_equivalentTo_rioja.R
d34bf0e1136daad9d7459b099fbf02d7 *tests/testthat/test_ascendingCompatibility.R
aa09f4538928fb6d88d293528e2626a7 *tests/testthat/test_chac.R
01b537b59c9f3e247d98bc015034d726 *tests/testthat/test_correct.R
c16eba8a6c623694369a4274a5d2d59f *tests/testthat/test_corrected_plot.R
e162b9f37b2e0cbb4df0fd51bad3db31 *tests/testthat/test_cuttree.R
84950b344add1399a1e8f36b75435120 *tests/testthat/test_dense_sparse_comparison.R
0d14b44341bf3837c2ca3f14d7b0e041 *tests/testthat/test_final_height.R
8ae8d8fdfd713732670cefca09d54023 *tests/testthat/test_hicClust.R
35236e768b4459582312d941de486f19 *tests/testthat/test_modify.R
8d324a5b939884b574865be329595644 *tests/testthat/test_plotSim.R
169a36c49655cf17955ae0588132cc9c *tests/testthat/test_similarity_equivalentTo_dissimilarity.R
6c1846989cbad1f4f1279efbbae5ffa2 *tests/testthat/test_snpClust.R
c1519829cdfc1919ca30f39bc66b9ef1 *tests/testthat/test_snpClust_NA-in-LD.R
ca16ff4247ded4a8e8ea89ace5faad7c *tests/testthat/test_warning_with_decreasing_height_plots.R
a053f2db6cc09f6e532cb836ec4b1c07 *vignettes/hicClust.Rmd
9fcc7d21a200d49aa4a705c0416d8f63 *vignettes/notesCHAC.Rmd
36938884fab89261f065da8ba73df071 *vignettes/snpClust.Rmd
