# Generated by roxygen2: do not edit by hand

S3method(colnames,SCE)
S3method(dim,SCE)
S3method(rownames,SCE)
export(barcode_rank_plot)
export(call_targets)
export(convert_to_seurat)
export(create_SCE)
export(diem)
export(droplet_data)
export(filter_genes)
export(gene_data)
export(get_clean_ids)
export(get_gene_pct)
export(get_removed_ids)
export(get_var_genes)
export(initialize_clusters)
export(plot_umi_gene)
export(plot_umi_gene_call)
export(raw_counts)
export(read_10x)
export(run_em)
export(set_cluster_set)
export(set_debris_test_set)
exportClasses(SCE)
import(ggplot2)
importClassesFrom(Matrix,dgCMatrix)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(dbscan,kNN)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,gsize)
importFrom(igraph,simplify)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,setClassUnion)
importFrom(methods,setOldClass)
importFrom(scales,comma)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(utils,globalVariables)
importFrom(utils,read.delim)
importMethodsFrom(Matrix,"%*%")
useDynLib(diem)
