294c97064dacc2537bb5038f6682c9e0 *DESCRIPTION
c57a64f551e73a6fa4749ae29f3b8e64 *NAMESPACE
e6247d49a9868d9432ceacc12432bb78 *NEWS.md
c933ba99f27b0d46ebe9a060be382894 *R/compare_dynamics.R
630c20641e7149ad63a18a473affbc85 *R/distance.R
4db693b958e9ec7659f86bba99820160 *R/greatR-package.R
c0fcd7771777e27696eeffa984a703be *R/optimisation.R
124b4e2c2ba15871597e795bee0cbdbe *R/plots.R
7f072ad9974208c25e2563169fdeb338 *R/process_data.R
4db6a5cd3e5aee784f8a6d809c250716 *R/register.R
4af15a3679b60cb8b27b648c47da4d5f *R/stretch_and_shift.R
b6ed7d2fb7229a664270822b3eb8b773 *R/summary.R
9a3180f711428476ff09631cf08c90cd *R/utils-calcs.R
b8a7af1dd0c58a426a8cadd004a09237 *R/utils-data-table.R
4246762f21be61e3fc3b1e30ffcfad91 *R/utils.R
d7a5815be79332da56fa3326d52f8b09 *README.md
da3fb93fbf19689c15f06bde9023c34a *build/vignette.rds
bb2e2a2ca8b56087f0bdd157ba413d3c *inst/doc/data-requirement.R
7bc7c5de96088db43260baddfc2f121c *inst/doc/data-requirement.Rmd
db48bc1548d8b9ae7c74e8d69461adc4 *inst/doc/data-requirement.html
d45eb757320c124bb8a9ad127a51a3d4 *inst/doc/register-data-manually.R
56c937d43f10063aa73b1a8d5803c837 *inst/doc/register-data-manually.Rmd
188dbc2effb081f6b56a00d755d30e92 *inst/doc/register-data-manually.html
c5d2bc17748374605070d62973c671d8 *inst/doc/register-data.R
aa39acd693a4e6cd1f74040c6824e727 *inst/doc/register-data.Rmd
98f0f4cfbdc5f665abda1a6e43132701 *inst/doc/register-data.html
39dcdc9ed49c626bedfa92c6e85debc0 *inst/doc/visualise-results.R
8b4b2abdf45eda354872bc9f11600eea *inst/doc/visualise-results.Rmd
52e9046e796e312c2a2ac3d4915ff00a *inst/doc/visualise-results.html
f4a4360e0c27d32462e4460f73962f5d *inst/extdata/brapa_arabidopsis_all_replicates.csv
7aba3af322a43efd79544e1176c43d2e *inst/extdata/brapa_arabidopsis_registration.rds
dfb2324dfa561fd1671f138f05d683a6 *inst/extdata/sample_data/arabidopsis_expression.rds
025aac55fc6afb73605b89ff39705264 *inst/extdata/sample_data/arabidopsis_expression_5genes.rds
a5bd04b77db0c00d93731a4d0a92c9dc *inst/extdata/sample_data/brassica_rapa_expression.rds
a834436f45fecc809121efa5e94c5d83 *inst/extdata/sample_data/brassica_rapa_expression_5genes.rds
b510e99e4e4362551fcd0a0deda08f42 *inst/extdata/sample_data/id_table.rds
a10aba62c9873a69ae48b0466a90bdc5 *inst/extdata/sample_data/id_table_5genes.rds
00da7ac4fe703cf2aa8d094cca3fc423 *man/calculate_distance.Rd
17566582143132a8cf160e784ef878ca *man/figures/greatR_workflow.png
dc28c4e5541b71bd9652e8719b4d795e *man/figures/logo.png
3979195a2ad5a25c2d5249118a0ecba0 *man/get_approximate_stretch.Rd
05132fa4c52491cbd294a42bc8bdcb0b *man/plot_heatmap.Rd
bfed99e021fa5fceae424b029703f7c4 *man/plot_registration_results.Rd
052d4f7d2d478b5b4b3e97689840a77f *man/register.Rd
4c1cd1c157ddd32cebd389465a24729d *man/summarise_registration.Rd
c4c5c56070abfbe17d03b39e6d174a2f *tests/testthat.R
6c9e117ca0bef8edf772954dedc63c6b *tests/testthat/test-dynamics.R
4ad41540e54070a6c985b4b92290c615 *tests/testthat/test-optimisation.R
b157a48fc0f7ebae76020f2623eeadfd *tests/testthat/test-registration.R
461de031aab65981279b4f458565f42a *tests/testthat/test-results.R
7fb7bd1c4ee895b5e79299e630b865fe *tests/testthat/test-utils-calcs.R
5ceeb419a954eeb14e21d11d50f752a0 *tests/testthat/test-utils.R
7bc7c5de96088db43260baddfc2f121c *vignettes/data-requirement.Rmd
e6f2b21d455a886b8782a6ff6e0f2eac *vignettes/figures/01_registration_opt_default.png
e7f767ee137f9006b708139f64351d6b *vignettes/figures/02_registration_without_opt.png
0a402ce546cba5e6c0d720e8c25a33e0 *vignettes/figures/all_data_illustration.jpg
f2bdfdc050424100d1cca3a0faa8c2e8 *vignettes/figures/all_data_illustration_new.png
1398bd39cea37efd437d2e1f6e5aeb68 *vignettes/figures/mean_data_illustration.jpg
75843b9da7510438df1ed89c73fb3b25 *vignettes/figures/optimisation_workflow_with_initialisation.png
fd07e0cad43367f90bf6a95fcfacfedc *vignettes/figures/optimisation_workflow_without_initialisation.png
74525183b54aff5b6299f57bc0e809b3 *vignettes/figures/prepare_data.png
7f3f752623632c22b4d5f63b842dcf9a *vignettes/figures/reg_results_with_boundary_init.png
dedcdb5a9dd72633b9e4a26e83c47ebf *vignettes/figures/reg_results_without_boundary_init.png
30c308cfbc65cfce09b6cb5a98090fb3 *vignettes/figures/registration_process.png
0e0682e80971cefe3d9106feafa97604 *vignettes/figures/visualisation_process.png
56c937d43f10063aa73b1a8d5803c837 *vignettes/register-data-manually.Rmd
aa39acd693a4e6cd1f74040c6824e727 *vignettes/register-data.Rmd
8b4b2abdf45eda354872bc9f11600eea *vignettes/visualise-results.Rmd
