034547e81660695324174843c1cba79b *DESCRIPTION
12a397718b29b04eab5c0ad50efc1025 *NAMESPACE
05d6d440574299a46fc4359f14e7c6a2 *NEWS.md
f04bd56b9f08df2f155e929a71608472 *R/AIC.mmkin.R
cf6e6cfdbd025ce8bec8f1bb25ef70d2 *R/CAKE_export.R
d42129a270867ba592070401327a0c6c *R/add_err.R
d1774b645fae9ee2c4f22fe454accb52 *R/aw.R
4205de41b42f17022a895286f9d64309 *R/confint.mkinfit.R
92fc60261e639d7d14f0989b4f83cc62 *R/create_deg_func.R
d967ab563c017a604f72fcd4e43bf38b *R/endpoints.R
77daf32aba492b0f4e233fbace11dc98 *R/ilr.R
30b677e6ae10259d4e3c793640df4954 *R/loftest.R
9e55b8c59ca56bac75f13b79bfb91b37 *R/logLik.mkinfit.R
92f179554d5d9c7530c8951f6dbf533d *R/lrtest.mkinfit.R
fa2cc8a49033fcef5717fc21d8574697 *R/max_twa_parent.R
00961b1295676ba4d2f0b8e573d808a2 *R/mkin_long_to_wide.R
7ddbc07ea8d8c1c8ccc0704ed833f5fc *R/mkin_wide_to_long.R
95f7fa35b69b282eb688cf06cee12fd9 *R/mkinds.R
3fa4b4d1c6dc9838cdc3f61b3ed1179c *R/mkinerrmin.R
90cb6e01ba46f7b92ed0ba8c827f8168 *R/mkinerrplot.R
c5702adbbf3687740dbbda02ee068131 *R/mkinfit.R
50d9f41ca744475b2b3fb828891ec5ca *R/mkinmod.R
69249473454267e49da7a6261775378c *R/mkinparplot.R
321d20497b9da9c3737dcb0f3cbdc009 *R/mkinpredict.R
b28e3c438559d4a6f00f9603e9d02876 *R/mkinresplot.R
28a77aa0886ecd69d0e2a907feb1859c *R/mkinsub.R
7250acef15ea990b2a2b71e8386e687d *R/mmkin.R
f38e8e2c6818848733501ee4fca821ab *R/nafta.R
3208af0e3340ba3b48a6939d6c26b5a1 *R/nlme.R
3e62d459e5de880d0adb0700f9e9230f *R/nlme.mmkin.R
72f3984f684d767358b8f8bc10d16e95 *R/nobs.mkinfit.R
51ea9a38608622c05aa135a6cf84bcaa *R/parent_solutions.R
11e5d9fc387b4a08ad58b5383ba8cef2 *R/parms.mkinfit.R
05f8ecf783dc8d4f359557ba6a9b5505 *R/plot.mkinfit.R
d18c296079ae97c5de94e81fc6ba9719 *R/plot.mmkin.R
5a89a4ab8f95fa336f71b0a35b512c98 *R/plot.nlme.mmkin.R
ddf32ed78f8b2850ca9b068509f6a02d *R/residuals.mkinfit.R
d95c8f19dded2bca67cda7929902dc4f *R/sigma_twocomp.R
8eba29cee2e2628b54392c2aeed3ea78 *R/summary.mkinfit.R
5754c0f1fbd01e04328b6c1660493f49 *R/transform_odeparms.R
0b91e8e4cf7601656cc75c481af4802f *R/update.mkinfit.R
dea9bb75b571e79e0080c259760c8d52 *README.md
8d3b4c6b7ea593d0bbca37faa26c9fd0 *TODO
301b0e3621fd40080f01d6451adbf451 *build/vignette.rds
d31d17a242de56d266802dea51c3e8c0 *data/FOCUS_2006_DFOP_ref_A_to_B.rda
6df80b3fe7017fc754cf0e1b43c0e0c5 *data/FOCUS_2006_FOMC_ref_A_to_F.rda
b431d5e1ef276f70acbf72da5d0f573e *data/FOCUS_2006_HS_ref_A_to_F.rda
70fecb5824d375d7b10593c8e359d6a6 *data/FOCUS_2006_SFO_ref_A_to_F.rda
923b30d673c885b018e39377ca653162 *data/FOCUS_2006_datasets.RData
e7773f34f48b992dc730c3f6cff685e5 *data/NAFTA_SOP_2015.rda
d48a8410d95aad72a8041fd4bb51c358 *data/NAFTA_SOP_Attachment.rda
e24ad67e5c0961e90c3fd46af58795f2 *data/experimental_data_for_UBA_2019.rda
516a81289b9605058fd8c783c1d08c50 *data/mccall81_245T.RData
e42e4e09288edc34e53d4e1678c323e8 *data/schaefer07_complex_case.RData
899fd5e3c63b9baaff67b0e49ac10711 *data/synthetic_data_for_UBA_2014.rda
e814c77e4374b7fbe588a1f98061dd65 *data/test_data_from_UBA_2014.rda
0cad8d6d2b0d5f656494ff7cc8947a3f *inst/doc/FOCUS_D.R
7d37d26a0527df462a262701faefebbe *inst/doc/FOCUS_D.Rmd
ebfc40f2a4c91537b8da817793405632 *inst/doc/FOCUS_D.html
66424c3c05beb89fab62732ad71d986c *inst/doc/FOCUS_L.R
5606844914e3dfc4696767f1afb2196b *inst/doc/FOCUS_L.Rmd
a47115affcbac3c63f176484cdafd6eb *inst/doc/FOCUS_L.html
968113370de1cf04269db761c742b7b7 *inst/doc/mkin.R
495e5bd6bfbc7c4853e50f77595b1186 *inst/doc/mkin.Rmd
895ba94908dba5c50e39533eabefd113 *inst/doc/mkin.html
fcd75005e57edb128feb0ea5a4fd812e *inst/doc/twa.Rmd
3807e96677f0ca1b8d14ad3d1143ecee *inst/doc/twa.html
c21e631c67ff475182cf38985402178b *inst/testdata/fit_old_FOCUS_D.rda
017227a0dd1da992876340355de2ee05 *man/AIC.mmkin.Rd
ecf3adaeae74723953a2f9652bb52048 *man/CAKE_export.Rd
28e49c7a71f70f1921342ddec5964f31 *man/DFOP.solution.Rd
30821ef8e958c71ee566d22a1cc48aaf *man/Extract.mmkin.Rd
d5c6bded1e259c9e420a8b2c718bd8ce *man/FOCUS_2006_DFOP_ref_A_to_B.Rd
575094f38c0c69debeee4b34a9ea9466 *man/FOCUS_2006_FOMC_ref_A_to_F.Rd
4a3d7bb1f40740c1c767edd16749b68b *man/FOCUS_2006_HS_ref_A_to_F.Rd
4568f0af9b376686e3a44f05a6a34f65 *man/FOCUS_2006_SFO_ref_A_to_F.Rd
c2577048277313b195170209eca9a47f *man/FOCUS_2006_datasets.Rd
0f1d79c0c996157c3aa31450ef14f653 *man/FOMC.solution.Rd
13b80e74bab1956cb6ef060234111ce2 *man/HS.solution.Rd
736ddf8c4f9597c8986fb90aeca97227 *man/IORE.solution.Rd
33967455a1e4d79d79e2b483f40337e7 *man/NAFTA_SOP_2015.Rd
f35ae9722491be0e03d6021946eb3b85 *man/NAFTA_SOP_Attachment.Rd
8a236a08ae699e201e7a231258ba1bb7 *man/SFO.solution.Rd
4ddbb5631423f4892e41b54e6b5cf353 *man/SFORB.solution.Rd
517c3b5273d8a5b13455c5a3abd9d374 *man/add_err.Rd
4176557f0cb0f8b340c3acfe0d8a7c1d *man/aw.Rd
46445422a929a67ff7584d4481af6ff0 *man/confint.mkinfit.Rd
b6a106bcd206957ff721a966b78c511a *man/create_deg_func.Rd
6fe8f56f11ca6a98a8028f55c1e302b9 *man/endpoints.Rd
2b17fc3640a9daa64820b825ba474ad2 *man/experimental_data_for_UBA.Rd
15e6d4c04ee35f0afc23f7fd6ce88437 *man/get_deg_func.Rd
0205266061d76db7ff27628702a62173 *man/ilr.Rd
4fc075b2bef747313fa0786bef16d14a *man/loftest.Rd
c73f1e1f71c81f7dd6b830e80be4fadf *man/logLik.mkinfit.Rd
74c126f3cb07a59a8387bb7faece673d *man/logistic.solution.Rd
66699b49b2856a4d92bf300ed30f8e95 *man/lrtest.mkinfit.Rd
fd72bbbaa5323746ede671a50675996c *man/max_twa_parent.Rd
4ab7490bffa7c791001149c2d40809eb *man/mccall81_245T.Rd
73a5edfdf1e46b0fe65657efffff2562 *man/mkin_long_to_wide.Rd
8cb0d692001a52814d85b0b074735222 *man/mkin_wide_to_long.Rd
2ad1fec14140f4a7a262400d012952e7 *man/mkinds.Rd
8d271ad038e91bafc1bcf27ab601e7db *man/mkinerrmin.Rd
0cf5f0bff6e2b576b779e6c02dd574ad *man/mkinerrplot.Rd
7c5f2181ec23310cdef1680e82126323 *man/mkinfit.Rd
7c3ec7433a063ed1a18df9627cbb38ed *man/mkinmod.Rd
2b1efbc1a880c71c80afbfb5712da3d2 *man/mkinparplot.Rd
944977c947ca5bdb51dc9a7110e8cf91 *man/mkinplot.Rd
02a54d3151ecc3d89d049515a1835ba5 *man/mkinpredict.Rd
378674e7f9b581df10dcc322f7029770 *man/mkinresplot.Rd
986abfbdb0b2b45638b1af4ec5f94d6a *man/mkinsub.Rd
03a8ad8a015e4ed462f2cb19f3d27754 *man/mmkin.Rd
d4b7366e187b0146cf50a412c34cfe58 *man/nafta.Rd
43915117e80e5f7e2a4ee2f724a6389e *man/nlme.Rd
d43249a5b728199081cc727f7bd57d01 *man/nlme.mmkin.Rd
af43556a0f71ee3d9d07b6ad72b9f910 *man/nobs.mkinfit.Rd
1ab70c8145935c6b017918a9c1aee100 *man/parms.Rd
fdd6f8701c49272900249ec36ab1a1e7 *man/plot.mkinfit.Rd
79412da53497c41352853b5fc20b04d9 *man/plot.mmkin.Rd
b0f0dfa52799cc3d5ce3e290361e240a *man/plot.nafta.Rd
8af46be530175e2d748587967acf490d *man/plot.nlme.mmkin.Rd
21631d195bf3f00bfbc1dec9e3bc9afd *man/print.mkinds.Rd
645adf532c4c820b5cfa7b5cab148aa0 *man/print.mkinmod.Rd
1d13505a771df3521785a4914df25825 *man/reexports.Rd
27d176867fa7012d63ed599f1bc62c2c *man/residuals.mkinfit.Rd
3bb9610ef0125d29173bbfc1d3c23d9b *man/schaefer07_complex_case.Rd
41a678b00f1382a6c1be9f1aca989855 *man/sigma_twocomp.Rd
41fe5879bf022b23c9e6d45603bdb74a *man/summary.mkinfit.Rd
da6334323eed361098adefc8d8dfa8d7 *man/synthetic_data_for_UBA_2014.Rd
acc8104f8124a9a223d7071550647d80 *man/test_data_from_UBA_2014.Rd
97ad362174eebdf16716530a3c2f06fa *man/transform_odeparms.Rd
c582ba8883c4f0b7080fd2cfb1afb900 *man/update.mkinfit.Rd
37455b724fc4126f1b8305cc5c05f444 *tests/figs/deps.txt
b7259949664e53ff9bdf914513d48525 *tests/figs/error-model-fitting/plot-errmod-with-sfo-lin-a.svg
9df15a6bad671ce67b4afb3ac3aafcc5 *tests/figs/evaluations-according-to-2015-nafta-guidance/nafta-sop-appendix-b.svg
587024155cc76bdec32f5a75d936432a *tests/figs/evaluations-according-to-2015-nafta-guidance/plot-nafta-analysis.svg
97a544431d9e5d3f624852c64b07b8db *tests/figs/plotting/mkinerrplot-for-focus-c-sfo.svg
1600b23ee5419af6f4e34b28dffd13c9 *tests/figs/plotting/mkinfit-plot-for-focus-c-with-defaults.svg
bf25c912337abb1c9e9ce3d86fae5d9c *tests/figs/plotting/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg
afa70793e0729604eacdaace55cff8bb *tests/figs/plotting/mkinfit-plot-for-focus-c-with-sep-true.svg
47d53e3fe488bf69f15fe5020aa8276e *tests/figs/plotting/mkinparplot-for-focus-c-sfo.svg
9a6e3aee94a0b4663cddf3092eee112b *tests/figs/plotting/mmkin-plot-for-focus-c.svg
efe08144f2fee1032817f0f9f29fb1b2 *tests/figs/plotting/mmkin-plot-for-sfo-focus-c-and-d.svg
14cdacd284eab8f6fb6d2a02960c4548 *tests/figs/plotting/plot-err-for-focus-d.svg
634d0364f36e0247f614eb9470ac65f6 *tests/figs/plotting/plot-errmod-with-focus-c-tc.svg
027bf5495b0176d9827bf1ef6c6d6665 *tests/figs/plotting/plot-errmod-with-focus-d-obs-eigen.svg
61f2a71a228a29dd7ac088ee28166d64 *tests/figs/plotting/plot-errmod-with-sfo-lin-a-obs.svg
ae893010fb638aba9844eb651483ce40 *tests/figs/plotting/plot-errmod-with-sfo-lin-a-tc.svg
84d028bc8f6faf372f551749958a72a8 *tests/figs/plotting/plot-res-for-focus-c.svg
d5d00fced4d49128f0080f8117fe4c38 *tests/figs/plotting/plot-res-for-focus-d.svg
f15b68906849109c3097e248581e5380 *tests/testthat.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/AIC_exp_d_3.out
a26291782c42d913de45017e3a4411a0 *tests/testthat/DFOP_FOCUS_C_messages.txt
728e0ee755b224973f0fb51208c1797a *tests/testthat/FOCUS_2006_C_mkinds.txt
785cc9112def2cba6928314d3920427a *tests/testthat/FOCUS_2006_D.csf
a45aa30ed9db715e0fcce820c66b45b9 *tests/testthat/FOCUS_2006_D.rds
56b51283f900e2060a87e0e0e5843395 *tests/testthat/NAFTA_SOP_Appendix_B.txt
2330dffee7b93ea765cdba6f0aae7c52 *tests/testthat/NAFTA_SOP_Appendix_D.txt
35744a40cfa8f8721950a06abf683ed3 *tests/testthat/SFO_SFO_printed.txt
fe92c8024600d3a9cb82c4798c41d49b *tests/testthat/setup_script.R
d1b644d9566cd74de11705f72c8aa57a *tests/testthat/slow/test_parent_only.R
560fa46287eb5b89803cf771055de8e0 *tests/testthat/slow/test_roundtrip_error_parameters.R
dcda77e31ca416095cf95292314530ad *tests/testthat/summary_DFOP_FOCUS_C.txt
044e3c95354dba6ce78be00ec177fec3 *tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt
59bc3e41e314242c61293c34ba2ef22b *tests/testthat/summary_DFOP_FOCUS_D_eigen.txt
78ff1de220bb220ab87610f71e90ef31 *tests/testthat/test_CAKE_export.R
596fc6f26b1e9ce1f5f07be6e693d1d2 *tests/testthat/test_FOCUS_D_UBA_expertise.R
64dae5be5c807bfebc6de0c01b145c34 *tests/testthat/test_FOCUS_chi2_error_level.R
8471d2c7ff0fefbd85fb23f2e046a3e1 *tests/testthat/test_SFORB.R
c79f59a0719cd967a4b62778edb67052 *tests/testthat/test_analytical.R
befb00af151162ee91bd13f83ae313b1 *tests/testthat/test_aw.R
695d341517f16983fa0471e26a57a1be *tests/testthat/test_confidence.R
3e19625b9744f733d7ac1d59d53ad31c *tests/testthat/test_error_models.R
a0a0ddd4ba604c4354a0ffad62a5ac4b *tests/testthat/test_from_max_mean.R
98a46dad44cf8bda83dccc66df6d1923 *tests/testthat/test_logistic.R
dc3b89dff0cbc6e45c792b7ab0668ebf *tests/testthat/test_mkinds.R
ea2cd14b4c317364a499d8d1bf4e483f *tests/testthat/test_mkinfit_errors.R
5c4d3a5c92e99aa95a9ca79243ef6453 *tests/testthat/test_mkinmod.R
d5fbdc2d9a922c3648ba26eb645e554d *tests/testthat/test_mkinpredict_SFO_SFO.R
b21a56c21adfa1ad9762dac142c43adc *tests/testthat/test_nafta.R
82872ace11fadbf7c0e0b39606537570 *tests/testthat/test_nlme.R
b3a50a25074187137523c9653677b8df *tests/testthat/test_plots_summary_twa.R
084dc6e9f764afd5f93b2fb8ee91bc19 *tests/testthat/test_residuals.R
a5cafd704af77202067d8ef47ce489d9 *tests/testthat/test_schaefer07_complex_case.R
838be99c2342a928d836ae6781d5092b *tests/testthat/test_summary_old_objects.R
f482850f1b173e5ba946ed72f3a80efc *tests/testthat/test_synthetic_data_for_UBA_2014.R
3f0f2ec6b0a0269bc01bead7b330215a *tests/testthat/test_tests.R
7d37d26a0527df462a262701faefebbe *vignettes/FOCUS_D.Rmd
5606844914e3dfc4696767f1afb2196b *vignettes/FOCUS_L.Rmd
495e5bd6bfbc7c4853e50f77595b1186 *vignettes/mkin.Rmd
d53dd0c4fe723475e654730934abd160 *vignettes/mkin_vignettes.css
cedd9dd577482c714bd7e083550d4546 *vignettes/references.bib
fcd75005e57edb128feb0ea5a4fd812e *vignettes/twa.Rmd
2f709cdb133ee5f297e8857f40603d07 *vignettes/web_only/FOCUS_Z.Rmd
5c6fb768d4a68dfe5cb2a9b3f1d8b54a *vignettes/web_only/FOCUS_Z.html
b0abad7ffd1254bcde84eb4078b69192 *vignettes/web_only/NAFTA_examples.Rmd
2305d548908b02a0b847d8011d9df2b7 *vignettes/web_only/NAFTA_examples.html
e8a78d0c38531bdd758c2b5b97a6ac5a *vignettes/web_only/benchmarks.Rmd
94319f60ea5d331828c940d912b8cc8a *vignettes/web_only/benchmarks.html
4e0dd067e2724755d4a98473f603cdcf *vignettes/web_only/compiled_models.Rmd
6564b5f55f8f75f76d4f78312ad1018c *vignettes/web_only/compiled_models.html
