21f97403813f9dd7740e448247ff2693 *DESCRIPTION
54100b3c8dcc2cf9653679b372521fe9 *NAMESPACE
654c5cf683e1a41332c74dd483a3b7b3 *NEWS
3eaafe4f18e15bd2b3e733d0c99a5c72 *R/AIC_momentuHMM.R
cee496dfc9b1780c9eea196685225730 *R/AICweights.R
46e13669e33abff0ef09d882f7bc7dcc *R/CIbeta.R
a2b6928b1aee464cb72a13344b798aff *R/CIreal.R
28f72204d67b88ca92e33d8342ffba78 *R/HMMfits.R
9e1d76fa07023167b35d1a7a347eb6c3 *R/MIfitHMM.R
71e6951c732cf2c5daf3b8edf1bb8c79 *R/MIpool.R
8f1e0006878661a5cec74a6bda638d4d *R/RcppExports.R
35996b044821910954d59df4985d656f *R/allProbs.R
a76768f6a88610cf3def97328e391c07 *R/checkInputs.R
5bc13acaeb26bdd3634511acc4059c4e *R/checkPar0.R
dd5e116be9ff408185baa2a72328a9d1 *R/circAngles.R
39ad735719ad44b8f7f1115c95830270 *R/crawlMerge.R
63bc5c15281db272cfbdffc020e85f43 *R/crawlWrap.R
d0fde0601947308d2705960803cf54dc *R/crwData.R
4422c3310fb574c0430efde13c6218be *R/crwHierData.R
0b8b98326b5f7ad3efee6655520c7951 *R/crwHierSim.R
5a698331ceadd4faea578b08824eea12 *R/crwSim.R
e7efd3eebd61bfe5fb0bea711d53f18c *R/distAngle.R
574feff188581fc395a65bb95ad2f7df *R/exampleData.R
41b0f7e129bbe2fa7c7af18c0a83e09e *R/expandPar.R
5c6e44f92989dc29e30bb6ba7eaeb1e2 *R/fitHMM.R
7bada879422fb558806d1542697222b2 *R/formatHierFormula.R
354f94637dc7b081a99f9b3eb0649ebb *R/formatHierHMM.R
9f4865ab77e92e8f73a7daffc223ae56 *R/formatRecharge.R
6259c2a1cff4d979082ad483453a2747 *R/formatmiSum.R
20cc17ab13b8ba166fecb1d5353e921b *R/getCovNames.R
d9fdf879e81705590278687e0bf0e351 *R/getDM.R
d00dea8739db27ebdea4b6cb4dee3b58 *R/getPar.R
9708330005e329f2503aeefa84d86515 *R/getPar0.R
b1ea33a3499a9545f055720cf316a70e *R/getParDM.R
446ad0525ad927a3345536c24d2ffa53 *R/getSplineDM.R
140ab55fc2e727a9ea4582d444e0dade *R/getTrProbs.R
39acf3cd5137d3053f909a7994d2441f *R/getWorkBounds.R
1058d9873e30790f4ce606497a15cef2 *R/getXB.R
a1c8199faaf1afe231049ba5c4d71c39 *R/get_fixParIndex.R
ac4671535d40f4bf68df6e9998fafee6 *R/get_inflation.R
aae74cbee7fa124db4e7e74166b799ab *R/get_ncmean.R
defea10aee62afcfd6bb52f0f5c52312 *R/get_retrySD.R
e0b51be9a73a60b3a5db0a2c0710d82c *R/getboundInd.R
faa05ff80e026973b73a59461a981f15 *R/is_formula.R
de4a0df3f7fdd676daa026ba9fe95e8c *R/logAlpha.R
e8ffb2d868f553693d594b6f975b286e *R/logBeta.R
eebe8b3ae6edb392fc61233e8394e28f *R/miHMM.R
af7788b9b41992fa95bea1e5ab2b09a1 *R/miSum.R
47a9178c84a5714b51e74236dadc96d3 *R/mixtureProbs.R
c1d5cdeeea4aa7d5ae044184f58ae6e5 *R/momentuHMM.R
775930039920b42f9c5f31b5f58c4292 *R/momentuHMMData.R
c01bc1490fe78f41c4244ed84e7cbb0b *R/momentuHMM_utils.R
a60ed2a97a52674285b4e49af5ba1e67 *R/momentuHierHMM.R
b3fbe60e65c9a720e759a3501dfc2e2c *R/momentuHierHMMData.R
67765aec21fa1da2ae859ce694baa076 *R/moveData.R
e0efa1dd71fd99eca7b1c8d76bd45888 *R/moveHMMwrap.R
4090029969502eaf28db647887105812 *R/n2w.R
79781efc1d57435efe8587ff97c328a1 *R/nLogLike.R
1f4fd0c942c3b9caae7bf95c71c491ec *R/parDef.R
3d241c48955b9fa71e08b007bac6f607 *R/plotPR.R
9a6da36e64534f26ad1c904b4867a134 *R/plotSat.R
219244893a7dcaeba2b1e1b9e85c63bf *R/plotSpatialCov.R
787001d0918ed64f7b9038cf02177e53 *R/plotStates.R
ff8b4de2662c08c2eef26807c11c96d3 *R/plotStationary.R
7624565e503fb4ecf010b93fe03f0a8f *R/plot_crwData.R
cd6c0b29064164df623deeb4261396bd *R/plot_miHMM.R
d6c758ab255400d184728ba988e8513f *R/plot_miSum.R
df244cdc212139068369f9d381768b6e *R/plot_momentuHMM.R
2410e35e9beb1e35a1c5b1d7e5f0a103 *R/plot_momentuHMMData.R
e83f3744d692c1c413a446b7021aafaa *R/prepData.R
950bb0827f2bde5ea67f4311f780667e *R/printMessage.R
a57d55c3ee2dd5dfbaceeed77f18b98d *R/print_miHMM.R
b71abb0b11593eb59b6be746237fab77 *R/print_miSum.R
86d3d0740b32cec7187f695211bdf034 *R/print_momentuHMM.R
a2d5a00c63e9e6237fa06e5f90af348b *R/pseudoRes.R
aef99c62ced31f827cf7e33239370583 *R/randomEffects.R
7e4afbebe3ef42a5a8d5eefd32387467 *R/rwrpcauchy.R
a113d790afcdc2d778f4cd30084d3f9c *R/setModelName.R
427b7f2d8cebafedf4c52420e679c89c *R/setStateNames.R
2f4116b745eecf4a3d0776a9f9e1bca7 *R/simData.R
5fa5e58afaea9ab54c32d14fcd12d58b *R/simHierData.R
5ced4d6f4beb8f88c5dcbe555352bf09 *R/simObsData.R
d481b795f5047962c512abd83bdbdb7f *R/stateFormulas.R
a5d567064b03c5f9e7a6fb7e8b85d481 *R/stateProbs.R
332e26a6d12a302511d735901e83fa2d *R/stationary.R
48346ddccaa8c8e761b15fe4dbc00e22 *R/summary_momentuHMMData.R
5095569d033b9fa6cc641f7b1e2cd0d5 *R/timeInStates.R
5bbb9b34d8f01ea8ff3bd9ef965243bf *R/turnAngle.R
4063a84fbf86e738c286bdd884ba44a7 *R/viterbi.R
a38db3133cca41b1b1438247c1af3a38 *R/w2n.R
73755656031792d042099b96e35384c5 *README.md
e90a8a830908d855da668ecbb9cd8805 *build/vignette.rds
9d82c8c0e8e2681c04ff444cabcb0c68 *data/example.rda
c6ee6ba98f69cfd1f917f8f0a99791ff *data/forest.rda
68e1811cea7011bee277d52920d281c0 *data/miExample.rda
cc2ab733f72968df6da42bea70151e14 *inst/CITATION
95835570521b8a781488fd10c3e8c6e8 *inst/doc/momentuHMM.pdf
3a3964f218a6279b45722646cbc3d1ea *inst/doc/momentuHMM.pdf.asis
5962039b23ef65655cbedda4a986351e *man/AIC.momentuHMM.Rd
ffd2f080bfc196b9db5daf4f7e5ba3cd *man/AICweights.Rd
44bf8518451bd535f71b885ed70d351c *man/CIbeta.Rd
00f029e82554a2a7d7c8c893c24a453b *man/CIreal.Rd
d291cd606b79396b656a662585580092 *man/HMMfits.Rd
3874923038d6b9132902b54dbcde07c6 *man/MIfitHMM.Rd
f427ebdb6dddf2f4e385e01619faadc3 *man/MIpool.Rd
d4b83196982d76c8f9aed75a12365822 *man/XBloop_rcpp.Rd
3ab767f6d0605212b9740e2a0a6e4198 *man/allProbs.Rd
09a90c190a89a99cc52f65caaf568d6d *man/checkPar0.Rd
6e32f6d5350e2b0ceab9d6de60c806a8 *man/circAngles.Rd
b75bd451442914259d489ffe48165c13 *man/crawlMerge.Rd
0b7954271dc599b0243dd18a43594ffc *man/crawlWrap.Rd
d88134344d8e5940f1bda0ddf76503a0 *man/crwData.Rd
0737cc7ac7a95f1949f9936b934f15f9 *man/crwHierData.Rd
bd8db9d5e11b22679549000cc8c92867 *man/crwHierSim.Rd
7c4f0364b276f37ca5469c7c6c7e5a12 *man/crwSim.Rd
e535053ebd10b6688fc9b43db4fd03f6 *man/dbern_rcpp.Rd
5441f92d4a0edf89fe246e611ae20d2a *man/dbeta_rcpp.Rd
deea42c16a04ed9ac0caef750ec293b4 *man/dcat_rcpp.Rd
953a2c8322835daf83aa938ce45b9aca *man/dexp_rcpp.Rd
71b84c528e1770689c60b5ea9aec947b *man/dgamma_rcpp.Rd
fe00316f145c1c371ae337861623e7b1 *man/distAngle.Rd
d941188f0a5fa30c719a5ae93fa1318f *man/dlnorm_rcpp.Rd
1b326d7b679b22251da7c9116bbbfe47 *man/dlogis_rcpp.Rd
ed861141fe130e126bc2848ce8423c51 *man/dmvnorm_rcpp.Rd
a9720ab3a41621a512df73f29019e33c *man/dnbinom_rcpp.Rd
aa18dff0eb871621b5f2febdf59dd27b *man/dnorm_rcpp.Rd
faddd36043704acbae96a6ab880addb9 *man/dpois_rcpp.Rd
6f66a1b2a39b57b2c5b0fde19ff3c6f7 *man/dt_rcpp.Rd
c331d29d31c63bd1362d0a6e347848f5 *man/dvm_rcpp.Rd
c8420c448a9d8ad8c2fe5f5ea309de93 *man/dweibull_rcpp.Rd
66551b21df0122b11cbe482c094c8b62 *man/dwrpcauchy_rcpp.Rd
3046b78ff81c2de53b440297b163f762 *man/exampleData.Rd
dbdf5f7f4d0dbbce444700626792acbe *man/expandPar.Rd
0b055190b25abc76b6a3b5c100b19090 *man/fitHMM.Rd
8e3f3041a7a1631f3697375cd681b143 *man/formatHierHMM.Rd
df7ef0066b8a197871aa692b10487159 *man/getCovNames.Rd
cacdfb8ec83709a43c0fcfe1df8288ab *man/getDM_rcpp.Rd
5dd6595b2b47705da596e850cc4ec01e *man/getPar.Rd
67559e4a2abcbe84905c75bba0ffbb24 *man/getPar0.Rd
ea242264fd2840c6c9e8ac30df2fa8aa *man/getParDM.Rd
e491fc1c62a2cd7219b4dd2597ed80d3 *man/getTrProbs.Rd
6375fc4db9a7c07d05fa4f7613dca4de *man/is.HMMfits.Rd
769f8269e0796d1b55b410a736004467 *man/is.crwData.Rd
e43492d53fa25767d98505b6a276c068 *man/is.crwHierData.Rd
ed34a9300ec7ae300ecc2b1974e548e0 *man/is.crwHierSim.Rd
295ab23d1cf4ec04454bb7ed4c956754 *man/is.crwSim.Rd
cfd70d5888ef05ce290bceb03d78b745 *man/is.miHMM.Rd
f16b45b1684dae4f2583f222a4bd1580 *man/is.miSum.Rd
f1c5651d7cbc38ad74adea650fd4d50d *man/is.momentuHMM.Rd
4425b3ad0d541ac7b994646b80866c7f *man/is.momentuHMMData.Rd
9d4e97862e29e2cc2b2be7e39f964f5c *man/is.momentuHierHMM.Rd
1b96398140e2064476de9a2d6d56d12c *man/is.momentuHierHMMData.Rd
63bb4ded4473223776adbba23e6bc506 *man/logAlpha.Rd
4fec03e00f48213011bd666e132ee856 *man/logBeta.Rd
1b6981f572cf4e63b831c487dd960d79 *man/miHMM.Rd
6b453dc727b22323858a9a5c3c8e6cf3 *man/miSum.Rd
8ea3595126bc61811ce0f1661e88f98d *man/mixtureProbs.Rd
0c3b52a2e7fbd8ffa53154606f301eb3 *man/momentuHMM.Rd
5bc98273d05ea49b6e4ccd09e89a0e51 *man/momentuHMMData.Rd
4acffdc3950a575158caa03d81ea86e4 *man/momentuHierHMM.Rd
8079e8d10f5e5aaffeeec117b9ca22a3 *man/momentuHierHMMData.Rd
c59e5bc458daa41aeb1bc00b8470b7b1 *man/n2w.Rd
c0f1b887e7bafc01aeea87d1839e3a01 *man/nLogLike.Rd
804784fabbd4905842751568d0400120 *man/nLogLike_rcpp.Rd
c06ce14c03b070a5e0a521e74df110d8 *man/parDef.Rd
9a52bd80ef22a3338c4740b07b80bec8 *man/plot.crwData.Rd
6a19024ce8ee302f4cddb6164643d149 *man/plot.miHMM.Rd
5d04f3bfdd06394fca521f66510329ba *man/plot.miSum.Rd
a8cab610edd9a2139330b43a0402ebc9 *man/plot.momentuHMM.Rd
2362e2f8a87074ef81b76de7ccd5a3ba *man/plot.momentuHMMData.Rd
12c62d0878ec42640b3e23d3352b34b1 *man/plotPR.Rd
a509952a0aca91b7cac3e927a474e760 *man/plotSat.Rd
ec98fb7eecd0c15ea3d1e8f25b44536c *man/plotSpatialCov.Rd
17aaa0e42253d52bff1770d27221f193 *man/plotStates.Rd
69ba4286808e7f573eeb07aa9b8bd8a5 *man/plotStationary.Rd
97b54f95ef16f2f2bd3a4c4561e2b2c3 *man/prepData.Rd
46c4b36c17b7e2eb7620781f05a76316 *man/print.miHMM.Rd
7c6dbc4a055268c07441c0a7c0f4530b *man/print.miSum.Rd
c2782db85eb43caebad85483eb7b3b56 *man/print.momentuHMM.Rd
5046639ffcb90c15419225e0b51e3766 *man/pseudoRes.Rd
0274e1dd2f925745f79c076a4e2ad006 *man/randomEffects.Rd
9eb60ec8b638fd09af4d68860380aecd *man/setModelName.Rd
58d422e2022e310b3371a8fa258798dd *man/setStateNames.Rd
f0a9c4f557eee1f38e006b84a756eb3b *man/simData.Rd
5d9404fe72809e07932019fe1e6eb5a1 *man/simObsData.Rd
1621e4a4808c463cf05fdf9a23e79e37 *man/stateProbs.Rd
cd85724c99c99d1bebae95672c19c3f1 *man/stationary.Rd
bcfdf67c70c2957e1c42cd94ff8f83ec *man/summary.momentuHMMData.Rd
eb83f0266e6ff5c74eb0a1bc0a42964c *man/timeInStates.Rd
ee3358fb8723d77fc500327c49f70672 *man/trMatrix_rcpp.Rd
d020111feff192e6ea8f281e1836c62a *man/turnAngle.Rd
1eee14623875d1a06b3ea02dd6c2f938 *man/viterbi.Rd
2419412f954dec38b34acf154c119344 *man/w2n.Rd
8e6e6637c2eecd8e072911d063d4e108 *src/Makevars
0d7c173dc5b63c740d6f0f8a839d54ad *src/RcppExports.cpp
f2317558385acd50e1ae23f025330e0a *src/XBloop.cpp
0feac1d041e09c185f9f7636fdfa8dbb *src/combine.h
c3cb511f535e42da05ce470d4fd62c00 *src/densities.h
07f72ae58e5fd258cd9a3d78678ccb11 *src/getDM.cpp
99cb2eb726504aa251f98783db1f6a92 *src/momentuHMM_init.c
fcdd1944963bf40fb09d107581e11e04 *src/nLogLike.cpp
b99907d8a0d34a193542a13b518f80f3 *src/trMatrix.cpp
77157fe74d1af34ac2c39d27ad4539b1 *vignettes/examples/buffaloExample.R
6b32ce753a712eebb7b470e5b954e287 *vignettes/examples/codExample.R
2a0744f9022ae376765b4b4cc100e463 *vignettes/examples/elephantExample.R
5d8205742196d1dbc6330874f468d4e5 *vignettes/examples/garterSnakeExample.R
038722cc990ee018be090963fcb3e66b *vignettes/examples/greySealExample.R
b6ef9c8f473a7567979d7dba19f11ddf *vignettes/examples/groupExample.R
1e562fa4d270d3e174a5381c00995b77 *vignettes/examples/harborPorpoiseExample.R
4f086e0ad7cdf3c3c83e7181a9b2c1da *vignettes/examples/harbourSealExample.R
c905402a0804ac2d0b5b18f7ffffbb16 *vignettes/examples/hornSharkExample.R
93212113d2a2454ee30abc3bcef5c55f *vignettes/examples/landConstraintExample.R
82e82cc67fafc679c7e447739336df1c *vignettes/examples/nfsExample.R
74cf8e0b5439b36c5f20204637ead11d *vignettes/examples/northernFulmarExample.R
36bcffeb82fd514e2382f4d091388485 *vignettes/examples/pilotWhaleExample.R
f3264158b0d1ecb42ee017cb06afd13d *vignettes/examples/sesExample.R
a68c257bb44084aab74b7def1584c8a4 *vignettes/examples/turtleExample.R
c44604365031a15eb5ff3b640b829e7c *vignettes/examples/turtleExample_rw_mvnorm2.R
3a3964f218a6279b45722646cbc3d1ea *vignettes/momentuHMM.pdf.asis
