TODO 2.6

removeParsimonySites order (weights als argument)


allSitePattern zu simSeq



optim.pml with formula object


Gamma + Invariant sites reparieren


Add codon vignette, describe CODON models and more data formats etc
http://www.iqtree.org/doc/Substitution-Models#codon-models
skripten codonTest


add all references for dna, aa, codon models in bib file and vignettes


improve website


dist.hamming dist.ml for larger distances and faster

dist.logDet include option to pairwise exclude all

mast mast.fit (p_vec1 + CH1) ausserhalb der loop in mast statt mast.fit







