1eb9bb4c55f0d640026647db1c5ce382 *DESCRIPTION
95ff5e814b87f701cc324780a590233b *NAMESPACE
8aa008a473f2ece4272fe88b3d7e1304 *R/RcppExports.R
455095ef1c553898ce9eecafcd4aff27 *R/cor_phylo.R
8778375ea0fab21c8adf21d617db4074 *R/data.R
35e5f2a8e1e6b3e6c7db1a46cdace799 *R/pcd.R
4189231115839bb4753e988e30357cb3 *R/pglmm-plot.R
f7cc0d3e9558eba88c6155e08e423ebc *R/pglmm-utils.R
e77a59e05b2943b5fee57e85c4cfd6ca *R/pglmm.R
0e590044f029473b4c1a65ec83a527f8 *R/pglmm.compare.R
1805c3f7952379e37e63e18cdcfe3b5e *R/psv.R
3dabc32529e6988fb852562e0857ca60 *R/utils.R
ce4e24881ba040b992e10a5a324203cf *README.md
43b405f363ddabc4551d8830b6cb7a83 *build/vignette.rds
8cbc3b84764ad5105fc337bf285c6142 *data/comm_a.rda
cce1ec27d3f2bd9f240a53b608538f88 *data/comm_b.rda
908f84c1572ac5bd56af139b1a373c35 *data/envi.rda
c1bdb3e75ef65ec1ef9a335f15c442d3 *data/phylotree.rda
45d35b84402439bfe5595f8190ec2fae *data/traits.rda
b95ba1c3b9ec23352f0e98e94f9c9f3f *inst/doc/benchmarks.R
1d541b32a49acfde83c137c78c0dc4d4 *inst/doc/benchmarks.Rmd
bf633c976f99448e5483bc752888ead7 *inst/doc/benchmarks.html
60edf2754c7ae5f5c578b03b93d59c03 *inst/doc/pglmm.R
5c0d4b6d6583e7efa14837eeb6453e40 *inst/doc/pglmm.Rmd
513c96ff0edef8f9e61d36042d236cc3 *inst/doc/pglmm.html
338061ba5eab08603b806876d18940b5 *inst/doc/plot-re.R
d23d7b824e71ed6174a0967729c3fde7 *inst/doc/plot-re.Rmd
2483150cbcac3a576fa8dc61e77eb721 *inst/doc/plot-re.html
64439e1cc8cbf205a1db3d98cb98d940 *inst/extra_data/comm_large.rds
d3d7d2586a7482dd012b150179a16309 *inst/extra_data/phylotree_large.rds
030895e69a7b6c0d93e1912563446849 *man/align_comm_V.Rd
7d32c93906092404924b7a0abedc69ac *man/boot_ci.Rd
d027ce2a174099516f7ba097d1cb26fb *man/comm_a.Rd
6ceed1d3190f30bc6f4457cd7c53fcbb *man/comm_b.Rd
b0c4f5b8f2c47b6299bff7305ee37227 *man/cor_phylo.Rd
0f064e3b1217c25c8b45ba8311646f1f *man/envi.Rd
7313145eccb6ec9fbf1c2a5757fb2d80 *man/fitted.communityPGLMM.Rd
b850564edc1d85cc77499c9bdb8776eb *man/fixef.Rd
2a87c1cba80e7baaedff5fc7bb29ea4f *man/get_design_matrix_pglmm.Rd
e6dee794f33f4c9eef3fe3d3174cb8ae *man/match_comm_tree.Rd
273fa1ac15f8940c83a5113c34833afd *man/nin.Rd
8bd69f80a576403d7eb4781a732e5ffc *man/pcd.Rd
1578e52ac5cae74c1f095227f5e57b56 *man/pcd_pred.Rd
14c975fcf9b42182431a06d172893037 *man/pglmm-matrix-structure.Rd
da2eef764a31c330ff237792a90549af *man/pglmm-plot-data.Rd
72df81b6b042d53acde18e1b6c949aab *man/pglmm-plot-re.Rd
8aef2ed5671c3f1fe520b48a649a4a5a *man/pglmm-predicted-values.Rd
cf0a78fe64df16d6474ab3eca3c227c6 *man/pglmm-profile-LRT.Rd
f0ed278bc32cb68f055d2d0d85838bb8 *man/pglmm.Rd
a476d8d7ed7dbf20ea397ffcc66045fe *man/pglmm.compare.Rd
a6d09e960de73abaa5be308674076c9e *man/phylotree.Rd
7dcdf85a3a9b67181d0bcdc16b34487e *man/prep_dat_pglmm.Rd
1aabdd0ee98dde51489a98dbd2d654de *man/print.communityPGLMM.Rd
e9590b49569165fcc89dd86f09f7b77d *man/print.pglmm.compare.Rd
d7dfeedb58bfa970b566d54056d294c5 *man/psd.Rd
5e1ad192f75e218768bdd3ea0ddf38f9 *man/ranef.Rd
af01f01985c1ba60ff9692b898c98db7 *man/refit_boots.Rd
3fdf3e886ed3a401a02715158f6bfb65 *man/residuals.communityPGLMM.Rd
4cd0df5ffa2f642ef957c80818ce2fae *man/rm_site_noobs.Rd
53056041dde0f944348ec31c27b000d4 *man/rm_sp_noobs.Rd
76efe0c884f0b20a6f992ce88e9fc51e *man/summary.communityPGLMM.Rd
6b86a7ff2c00d586b76f5d8989a45a87 *man/summary.pglmm.compare.Rd
ff51692ec3ab2c76b75d2c4132fd274d *man/traits.Rd
3a6a9329f18f5c23b63ecec8d699f62a *man/vcv2.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
3b91159514caccada8d8805fe3c969ed *src/Makevars.win
fe0bda04b2abc004a56292f4cb887c3b *src/RcppExports.cpp
7283fcf32f8e43de94fc9695bc213999 *src/binaryPGLMM.cpp
5cf8e5ffcaf3a3b097c47506b0e75d3e *src/cor_phylo.cpp
cf5a34cd4a0c17e33c4c0f32f6c00ad1 *src/cor_phylo.h
cfdb906749af1ac1af38731d914ed2a9 *src/pcd.cpp
c866c6db2f4b4e22871b9f66556e709a *src/pglmm_binary.cpp
db9b869bc0012b0d9e507662cb182fcb *src/pglmm_gaussian.cpp
10229aab29bea61e2cb549d787c7cf77 *src/psv.cpp
9d6339a494d3b9cffda8ee383bf0f0ae *tests/testthat.R
4cd5936d7b6f46849092b20726ef0734 *tests/testthat/test-cor_phylo.R
13733e95c3c321f86d9d5534ef0cc0bd *tests/testthat/test-pcd.R
df459177f66379d7582b54909cb09a9a *tests/testthat/test-pglmm.R
4bf6c2dcd930cf1a63751ab491dabc9f *tests/testthat/test-pglmm.compare.R
80baad4d302885f081ad86cea664fa4d *tests/testthat/test-psv.R
45a45dfcbb3bea4afafb232ccffeb2b9 *tests/testthat/test-utils.R
2732181d4b5fbe352d7fa936e6c9a5fc *tests/testthat/test_pglmm_utils.R
1d541b32a49acfde83c137c78c0dc4d4 *vignettes/benchmarks.Rmd
5c0d4b6d6583e7efa14837eeb6453e40 *vignettes/pglmm.Rmd
d23d7b824e71ed6174a0967729c3fde7 *vignettes/plot-re.Rmd
