4c9890652a9ccdb02f71a77f12837f91 *DESCRIPTION
102d182fbaa88a3f1c11e16775fe041c *NAMESPACE
576412021c6f8a67f15aa74a11ffa62f *R/PTM_MarkerFinder.R
edb55dbf703db5095ca2da3acd2b1510 *R/aa2mass.R
e474472ae1e9a38ba5d12c4f45fda68f *R/de_novo.R
9d1f99cdebb11e0b49c3b98b767b9879 *R/deisotoper.R
41c3a16acf4714c5186c481af8c34dfb *R/findNN.R
6c2bd5f48211be54d2ced5b6ec9ed88d *R/findNN_.R
ecc561e9985b6436127d14b2c478d4da *R/fragmentIon.R
451317ef11b6a2f96b8694a36552047c *R/genMod.R
383914886d1596b45fdde36cd38553ce *R/iTRAQ2GroupAnalysis.R
781a5f51181c7adb9f9d68084fd6b601 *R/lcmsmap.R
0d92b15f4a666bdf556c98a322b1b6b4 *R/mascot.R
6842712841339c3928f48636f8e54f7a *R/mdp.R
a952cd0c2a2c62d02c60c0a76e57f455 *R/parentIonMass.R
3921a97921322707d4e2c349f21759f2 *R/peakplot.R
c36eba240126b1af709dad766791c406 *R/pgImporter.R
15ae159f85652a791453d182cc29bdb6 *R/pgLFQ.R
1bdb82885d61c7ee79332a277f5a2220 *R/pp.R
7a7dd34544afda015955872156a31424 *R/psm.R
32987e7fbea0c81c0fa8600b5639441d *R/ssrc.R
7593968ba9533e62fd8c752f2a8c01bb *R/sysdata.rda
bdb7e9fb109ba29494ec96d8c73d129a *R/zzz.R
b6353c61126183fe6ef3f341dadaddff *README.md
d4fd71d51a8622728bb7f4f276a06e02 *build/vignette.rds
a4b835997fe3fe64238836eb5d979742 *data/AA.RData
a7d9cde11a9f003614841335f8e079e5 *data/HexNAc.RData
ce174ecc08dde8c7e9a20f639f366228 *data/averagine.RData
4d8e938a5e8d2088206339a3da299e4e *data/datalist
d587791a5c9d55fbf7a618be3d5cc75a *data/fetuinLFQ.RData
601922c525f1b02d7f3c2a3b33a43ba5 *data/iRTpeptides.RData
bf9c18b97846ca3619b7ceb5b2e46cf2 *data/iTRAQ.RData
8450919282665051d39daabe6aa183a9 *data/msms.RData
40467c3fd4bcc9388f58320db2e6a94d *data/pgLFQfeature.RData
d25756525079de04b8287ff934c8bd5a *data/pgLFQprot.RData
c234dff499abc2d9f61c97e3d7c4bf40 *data/pressureProfile.RData
91bbcb579b686ad2cf58ddcb6829b96c *data/sigmamix.RData
daa9c303936ebe822c0bfbebf6bd6733 *demo/00Index
d553d739fc6b78566ed04444d0a461df *demo/PTM_MarkerFinder.R
f45c1b16c999f2c36134eecadb373909 *demo/peakplot.R
e8e6de925245a465d2ac421ee0628597 *demo/pressureProfile.R
950fc7588fa2221d07ea26e4eb46a116 *demo/quantification.R
2e96a497a8a8a6c6f07acbe14f30ac92 *exec/protViz_annotateSpecLib_with_protID.py
670d6468c76929c27cc04bea7df18825 *exec/protViz_annotateSpecLib_with_protID_split.bash
006d9ad3aca2c547707fb572255bb9ad *exec/protViz_bibliospec2RData.py
386ed045a439e0339d35262e9d719450 *exec/protViz_dat2R.bash
ca2fe9383a60b3c8a0d63481dbf38f9d *exec/protViz_extractPressureProfiles.bash
6e56290871832dfca27d85b031322397 *exec/protViz_fun.bash
7c4f3c80da1c09aa515923b10fc65776 *exec/protViz_mascotDat2RData.pl
61612465d8709a41239b82546bdf8876 *exec/protViz_mgf2RData.pl
43b1b837a44e4473528a37c7781d44cd *inst/CITATION
08d138ae6eb699915e169bf84192a420 *inst/Dockerfile
5827c4303eeb0d1372e3600b4c652c5a *inst/NEWS.Rd
a15942351a7fbebc2e462b34f080675b *inst/doc/PTM_MarkerFinder.R
7081fa3674d640602164d6e6a9bfd477 *inst/doc/PTM_MarkerFinder.Rnw
941b46954872d366e97d31c5a92b1473 *inst/doc/PTM_MarkerFinder.pdf
da1b0cbe112b969159c015a6463e65fb *inst/doc/protViz.R
f52feae1770ebc2c6696ad0ce7ca9ecf *inst/doc/protViz.Rnw
98f86078fb9e1636f277e31be2064d5f *inst/doc/protViz.pdf
ac2b17d5980ffeca1ff3e2078e7099d8 *inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R
0a6c2bf42e9d8e262648f90bb58ad0ce *inst/shiny-examples/PTM_MarkerFinder/server.R
ceb64018484e432b9e11713a729ef545 *inst/shiny-examples/PTM_MarkerFinder/ui.R
c842585df78eafd3aa6d7da07bebdd04 *inst/shiny-examples/peakplot/server.R
2dbcf913fcbba0e31480b14447b181a8 *inst/shiny-examples/peakplot/ui.R
43e0ca2ed4068a2e676d87103611deae *inst/unitTests/test_aa2mass_main.R
77ec94c4f0e76139a081e98a27a1c5fe *inst/unitTests/test_aa2mass_main__verus__parentIonMass.R
160cd629849a1f616b961a0c51a9555a *inst/unitTests/test_deisotoper.R
8020a898ae401e6604de8f22f669597f *inst/unitTests/test_findNN_.R
b3fd9b4c5437d1b6e94e66176440d0ac *inst/unitTests/test_fragmentIon.R
3e54b239107ead34b9c31ad712f05c44 *inst/unitTests/test_psm.R
9e862547b1dfb45463a1e03e389b8361 *man/AA.Rd
7c991c49284819c1e7e26fb98c8fdd50 *man/HexNAc.Rd
ad84ec22bd891618a8fbbb919f0a242f *man/PTM_MarkerFinder.Rd
23b1bc60ffd8529d3e8041b787656e99 *man/PTM_MarkerFinder_util.Rd
43308db08c425924502856cec0ab200c *man/aa2mass.Rd
489d35474a3d7cada544fe83b0edcee4 *man/averagine.Rd
b164fa16c5abdbd02328de98905ef623 *man/de_novo.Rd
73f831a090be3033cd3a452a44067663 *man/deisotoper.Rd
a61b49e4c574c28df134635ad3d3b0a3 *man/fetuinLFQ.Rd
82f534e54db0f4fe114185c5f5733437 *man/findNN.Rd
8f40a136d0cbb23143b2a97c277aae27 *man/findNN_.Rd
d8272e6d01f4e1568087e91ecd3c3d5e *man/fragmentIons.Rd
3f2228152c2bb7caff29ea9e450bd78c *man/genMod.Rd
17dfd02637a460a2a333f75ca66e594c *man/iRTpeptides.Rd
2e31ca5b84385e4b4f73073444a22cda *man/iTRAQ.Rd
c849ce9d6aaac21264721286b0a618b1 *man/iTRAQ2GroupAnalysis.Rd
b4d3cd33d3c18c8af18f09520fa46d81 *man/lcmsmap.Rd
71c22b57ffb7789db6cb367f1e084d80 *man/mdp.Rd
3fa37904e15542a9d8047313c354b249 *man/msms.Rd
fd75f35f293a0e62ec5a2831daa3fe95 *man/parentIonMass.Rd
15b452022eab7520b684abe6bb91199c *man/peakplot.Rd
a41003b07860d285e922dfbfaded7fff *man/pgImporter.Rd
94216a2c8bdf765e9c6a2acb305101cf *man/pgLFQaov.Rd
90160c4ae4961414e36744d72b8f83bb *man/pgLFQfeature.Rd
d5868088a1788699f969461527899b27 *man/pgLFQprot.Rd
57487772317b6f64a97db714173e7cb4 *man/pgLFQtNpq.Rd
f356172ee512d02e4b4783c425383960 *man/plot.mascot_query.Rd
8cee211c76eec2b80625377908f9316f *man/ppp.Rd
e73d6869e195acbe8c372b2213772f3c *man/pps.Rd
4ca6d1cf44e7392671a03781f3887f2f *man/pressureProfile.Rd
2cadf7b5d529cc8719869f914b3ca898 *man/psm.Rd
28d384da9bab5fbbf5c1ed73bb6393d6 *man/sigmamix.Rd
c32b6e501b4a2804a891a7d914faa2ef *man/ssrc.Rd
a804ef7b728d2dbaa983fd1ea3da7fe6 *man/summary.mascot.Rd
99acd5c396b224ad45b52dc06752efe1 *src/Makevars
95839cb7a54933126578c8e51313b81a *src/aa2mass.cpp
7ed16d8640f6152e015319c911fb3a07 *src/base/chemistry/iisotopeenvelope.h
efae8513d316cc1b04f373bb921823cc *src/base/ms/deisotoper.h
77986b618519e5e1c413a7bca8040378 *src/computeFragmentIons.c
53b2688824c377621e1b8ae2b24afcb4 *src/computeParentIonMass.c
9007e5c3aba69100c454693baa6ff556 *src/deisotoper.cpp
08bf96dec9f8910f5e301d7fca7cc20f *src/fcat.c
285670e8f3bb12d7825d7591779e9432 *src/findNN.c
21f4f0607974821eb394b62d6eb52b26 *src/findNN_.cpp
2e35dea87627fbfa4bbca0cd161be4d8 *src/protMass.c
a0abcbe6b8f34dcebbc8339b1fc4b675 *src/protViz_init.c
75f3ba46f2e925198b12edf3a8d73f5d *src/rcppdeisotoperenvelope.h
42adb67f2cafa7634115ec6edcb8454d *src/tryptic-digest.c
e588ec0224c1f42429555e1958365ff8 *tests/runTests.R
7081fa3674d640602164d6e6a9bfd477 *vignettes/PTM_MarkerFinder.Rnw
f52feae1770ebc2c6696ad0ce7ca9ecf *vignettes/protViz.Rnw
75b6a6f1acaa7444504cd473fc3d5958 *vignettes/protViz.bib
