e09be89ab5c67e1cb17a37938924c7d5 *DESCRIPTION
f9faac93bfa0b0fcacaf5b9e0c81b6ab *NAMESPACE
93c3782a2775e74b8ec08555cec11571 *R/Non-Exportable-Functions.R
a483fb77534cef7a4754e5635fb2cad9 *R/aa.R
4a25d93290a2f92103fcee3283e26195 *R/abundance.R
f4aaccb1c7956ff3217147f4b051daab *R/accdpx.R
9307b0f2852333a373d03e82a75712bb *R/ddG.R
ac47e5a54ac6d63564e52b10330ae3b2 *R/distances.R
d601086128019bfd905962394a448ae1 *R/environment.R
e70261474eb2e05ba9cd9896b118f77a *R/evolutionary.R
00e47a8f17ede2d0771b81a156144bc7 *R/getseq.R
4c55e340e0721e151c7d12bceb71340e *R/go.R
e6d2b73ce41511b523bd2b68750b4150 *R/gracefully.R
e410484508ca33f3203bbe7aee0c3230 *R/hmeto.R
d74e5b93b56c1ced3cc781aa4dffbc0f *R/metosite.R
b997cb2557c2fe49700d20d475977300 *R/ptmScan.R
073feb4258c679222b8a4cf047e28dca *R/ptmplot.R
e250554f6ba981f4d3f9e1aa6dc48221 *R/saromatic.R
975e4ad5255bafa3b02b30085f3b1a68 *R/sysdata.rda
c872615432a6f025cc6c2662f3d96fad *data/hmeto.rda
5ac22123688366bf103c64d2e136501f *inst/CITATION
4223ae3ffdd7976d5e261330f7aa2675 *man/aa.at.Rd
0edffa215e8af181fb6cfcf21f1f8c1f *man/aa.comp.Rd
37a423018d29a624df1fc468379cc398 *man/abundance.Rd
6c542451cf19eaac812685882e501c39 *man/ac.scan.Rd
0c7a1dd77180054d553eef3aac502555 *man/acc.dssp.Rd
8cbfb12166e892cf8242bef8275e0739 *man/atom.dpx.Rd
a2725f49d29eff92bd5c4d14d43fed9c *man/bg.go.Rd
840c318b8e12ab5d3f05597853374489 *man/compute.dssp.Rd
75f3d79323803e6d7ab84869c59670cb *man/ddG.profile.Rd
4b6678d86938f85f7e496d7efadc5f21 *man/ddG.ptm.Rd
f16f40d7e658f1125bc94804c7a355d8 *man/dis.scan.Rd
50d80ba50393fa4a908e607ae680999e *man/dot-get.exepath.Rd
be03be18efbb18fb6291b9faae7ae518 *man/dot-get.url.Rd
fa0fb415f1fddeb3ae39defba56af644 *man/dpx.Rd
e0a826b71f12a079d66d383229cd7cc6 *man/env.Ztest.Rd
5be8024a546a7b9597dabbc8da4c5fbc *man/env.extract.Rd
5967bc98418303a084fc1a9679433fee *man/env.matrices.Rd
7d135625fec276cac4eb23deb3ca6a59 *man/env.plot.Rd
1c2ab19cd0daa27a42304687dd0c3b90 *man/find.aaindex.Rd
ccbddc384e3b36577eeedfac74b7436d *man/foldx.assembly.Rd
0475a7b6704273d9340a88c2520f1216 *man/foldx.mut.Rd
b4d58fa028ffa87620343bcb6db9e3d7 *man/foldx.stab.Rd
78932d415789c078730f07162ead43c6 *man/get.area.Rd
84ad4ff9739c27ee802f678320221e4e *man/get.go.Rd
e1da3f15109f1061159edbbd79396704 *man/get.seq.Rd
cd31b42c34f1bbf760aa755ee7d18925 *man/gl.scan.Rd
e0a585ea26e5968aa84969c7e4a389f2 *man/gracefully_fail.Rd
42e75903bec81f04de01a6bef9cd0b83 *man/hdfisher.go.Rd
8d220755f3d135e8e1fd2f7b2cdaaf0c *man/hmeto.Rd
f81bcdca9dd54d72d5d6be22ba07dd28 *man/id.features.Rd
320a6f429aa192a8e977c6fbcb8878d7 *man/id.mapping.Rd
1af00e7025eb3c53e7747d260cdb79ec *man/imutant.Rd
26cd93bfe634190bf4717683a1417b3a *man/is.at.Rd
5e732df393cb0babe19a695f294f31a9 *man/kegg.uniprot.Rd
9ec6e1a61252855421f90f08862903fc *man/me.scan.Rd
ad6b5804790282ab95db341610ec74e5 *man/meto.list.Rd
92d9abf4337955ce088f32cd00f09802 *man/meto.scan.Rd
81aeb60efa5e64a1d63bb48853bc3617 *man/meto.search.Rd
fac982404f534c375adb76ad5d6bdef0 *man/mkdssp.Rd
6f6d867de33e2d702d067727794c526c *man/msa.Rd
b4fdc7403d584930270b43fb88e5ec0e *man/net.go.Rd
ab17ecbb932a21104731ad11d7911f2e *man/ni.scan.Rd
23dc77bee61ebb53e53f507b5d7e7f9f *man/p.scan.Rd
d93e0722cc6f06574c219c8d86b3dd6d *man/pairwise.dist.Rd
4b3abd6526b1285cc5a87be08abdebcf *man/parse.dssp.Rd
c8989be28d063246fd71ebb54b6cfe56 *man/pdb.chain.Rd
203df28cd87af1031a4b97eb9f7c6563 *man/pdb.quaternary.Rd
592479da7d874dd4f616ac19da5ca953 *man/pdb.select.Rd
1e3fc258635ebafb4aee0e5ac556d690 *man/pdb.seq.Rd
fb80dc95cd7590cf231d460021480d8e *man/pdb.uniprot.Rd
dff89409de38ec438d0891c24fcb3a7b *man/pdb2uniprot.Rd
b06fc5862ccc566062d66c2d3b1c9329 *man/prot2codon.Rd
4d4ff58fbcbcf553ef88a13a425ec41b *man/ptm.plot.Rd
22cdffb35a98ebb55ef4c406ab64f27c *man/ptm.scan.Rd
02938c3e217a8e311ef076111a6bb21a *man/reg.scan.Rd
75f4cc72ecd26627d24fc167e49e6ce4 *man/renum.Rd
38fef23463015231af239126928d1893 *man/renum.meto.Rd
bd1b874eb02b54cd59f315b608622cb5 *man/renum.pdb.Rd
ab4d48a31b8e43d904ad485b5a327714 *man/res.dpx.Rd
ef05eb33d3ccba103d1a00ba319df9d7 *man/saro.dist.Rd
f2eb7f69a0de160f914e51ca61b1d334 *man/saro.geometry.Rd
ca33814da68bda2e814ea457e738cb05 *man/saro.motif.Rd
70d8b3f243be7a8b469951674af30e2c *man/search.go.Rd
222954ad00d7dcf6c06b58fc1f4cff42 *man/sni.scan.Rd
25e13006e66c2b17e3e951434059c1b3 *man/species.kegg.Rd
3db0141405d4ebdd2e300f312c7872ae *man/species.mapping.Rd
38d8a8b53c57a71f4e01af3fece4d417 *man/stru.part.Rd
d1d41c786c119dca208f72cfa81e95da *man/su.scan.Rd
75eaaf9c591e27b64545716a97103fc1 *man/term.go.Rd
6eb682150d2830ed5033f0fd6a6fc12b *man/ub.scan.Rd
a575fad1ea3ba9719e7628e4ba60ee83 *man/uniprot.kegg.Rd
647cda1770767c3dba8f6144413e50f2 *man/uniprot.pdb.Rd
5762408a92a6ca73a1f965122b1e21f8 *man/uniprot2pdb.Rd
8660a8a7e13c1396ba3a8fce204ac59e *man/xprod.Rd
495088438c04630b5f6d76598ad6a230 *tests/testthat.R
9ac3c7f3f722fdb89bf0e00617f24049 *tests/testthat/Rplots.pdf
868f01bcfd9f61a375be9bef29469469 *tests/testthat/go/GObackground.txt
64823b4da7b1c2e9a03e87cf790818e5 *tests/testthat/go/GOvivo.txt
a4d9553804b6327ab8bc29c4e644c585 *tests/testthat/go/id_set.Rda
cd61be61ef51b23475bce239a525e6ee *tests/testthat/go/id_set.txt
0874348287a65493aad6dd44ccc0cd59 *tests/testthat/go/id_set_dummy.txt
b2d68a0fd3707b3866f9c8c0289379d8 *tests/testthat/pdb/1b4i_Repair.pdb
670895774df60808d52dab0ebe7f0fa4 *tests/testthat/pdb/1u8f.pdb
dc401a25e4d7d049c81da18c8794ceb8 *tests/testthat/pdb/2dfd_Repair.pdb
11bbc3ad51bd134f762e018000e7910e *tests/testthat/plotptm_cache/scan_P09803.Rda
999832a2b9cc46a0ad11e6f274d1999d *tests/testthat/plotptm_cache/scan_P18031.Rda
48fcf795b631e0399a198e2948b9e601 *tests/testthat/plotptm_cache/scan_P23246.Rda
df7d25b77b3c5c22f476d474b8f526a2 *tests/testthat/plotptm_cache/scan_P84022.Rda
1540267e9ee4038026ec97f50d5523eb *tests/testthat/plotptm_cache/scan_Q01196.Rda
1cd07c9775d2f3e7f536f4d16d3d8d31 *tests/testthat/plotptm_cache/sse_1H9D.Rda
56862865054e8b790f863790b8e5cc88 *tests/testthat/plotptm_cache/sse_1I7W.Rda
17f5e388a9c7947231427d098755cd58 *tests/testthat/plotptm_cache/sse_1cmo.Rda
b3ff888e8d84226782b0807ab59ee0b3 *tests/testthat/plotptm_cache/sse_1u7f.Rda
39abf851ec65b024fb482cd5a01540b0 *tests/testthat/plotptm_cache/sse_2cni.Rda
e1424c6d16ea7749d6cabe2e79c6f532 *tests/testthat/plotptm_cache/sse_3q2v.Rda
031b9ce4789ced8d38c5bda88ab47bda *tests/testthat/plotptm_cache/sse_4wij.Rda
a7633c42af22b2c78649b60cb0601c18 *tests/testthat/split_chain/1h9d_A.pdb
bdc0295beb3bff980de64843a0e837e1 *tests/testthat/split_chain/1h9d_B.pdb
57dba35cfbefe375b0d00736b9285b43 *tests/testthat/split_chain/1h9d_C.pdb
60e50dae95d10e532bbb4f760bee333d *tests/testthat/split_chain/1h9d_D.pdb
7a4dd6c89a21f3c11b7c4d43fe92b6d5 *tests/testthat/split_chain/1h9d_E.pdb
20f1fdc21180f3ff3d3fec80d838dbc0 *tests/testthat/split_chain/1h9d_F.pdb
2150ed9ec9078b4c907b1ae9aaaf40b4 *tests/testthat/split_chain/1h9d_G.pdb
4cb662a922111e8bca152916a113956c *tests/testthat/split_chain/1h9d_H.pdb
5ccb7b607f65d808beb70365d5bb966e *tests/testthat/split_chain/1u8f_O.pdb
370f879b3b7612a7a489d52ca852f610 *tests/testthat/split_chain/1u8f_P.pdb
646098cf953788d7f00683ac0b5a20ea *tests/testthat/split_chain/1u8f_Q.pdb
646abf932df0671c2b537b0e4b9a1e83 *tests/testthat/split_chain/1u8f_R.pdb
8e29b88658ca5f94fb5c657638707b71 *tests/testthat/split_chain/2xqq_A.pdb
c2034f00514caf27bfebdef764806b89 *tests/testthat/split_chain/2xqq_B.pdb
ab630827341ed42108e2acccf32add13 *tests/testthat/split_chain/2xqq_C.pdb
4b45170b4b208774c20b7d7816823bad *tests/testthat/split_chain/2xqq_D.pdb
586b14b02e3f6c46f0b016503f6e065d *tests/testthat/split_chain/2xqq_E.pdb
4cb23fb79382763c4c6cdae3c694e303 *tests/testthat/split_chain/2xqq_F.pdb
c7de3b3af1b861707132445ca2859d40 *tests/testthat/split_chain/2xqq_G.pdb
dc5a321b2392b0b70be0af200b910193 *tests/testthat/split_chain/2xqq_H.pdb
8f76cf2bcd2aa2409717bdc966785a9f *tests/testthat/split_chain/6lu7_A.pdb
4a341c539c6cb48103761f780c5667fe *tests/testthat/split_chain/6lu7_C.pdb
108214c44d2f2094f1f01766bbd0b021 *tests/testthat/test_aa.R
28405f1d7a41a96d13d970da3218868a *tests/testthat/test_abundance.R
d291032fca5581f80c286b0ed76c2737 *tests/testthat/test_accdpx.R
e9c733de300ffcd9111b852c547b50c3 *tests/testthat/test_ddG.R
29dfd0dd225cfe6749a486729ef15bf2 *tests/testthat/test_distances.R
bd2d74eef65a0f5a51fa60827542373b *tests/testthat/test_environment.R
43d25daea7f99a3282f14cfcab4eabf0 *tests/testthat/test_evolutionary.R
fda99662e3ee13e3680c472312977a73 *tests/testthat/test_getseq.R
00c1c1bfd4f01abf774ebf70925c8463 *tests/testthat/test_go.R
9f47fdd1f43b2cfcc4adaef9618f67ce *tests/testthat/test_gracefully.R
61bea2e9e41a65dddb6967d633de6a21 *tests/testthat/test_metosite.R
4c003414b450b70460eedaba117d243c *tests/testthat/test_ptmScan.R
9efe87bdb33c2644697177bd103d6725 *tests/testthat/test_ptmplot.R
726ad49c11a449f92207bf1c15f3472c *tests/testthat/test_saromatic.R
