3e72166be57388c0cb3227abe341ca9a *DESCRIPTION
f7f1fe12f2f34c0c3ae8b82f81ee6496 *NAMESPACE
94a1509dab0926c71a296f8da0d91277 *R/PCA.R
589c8ec2cbab6bd6fc807c45e8c41eb9 *R/RcppExports.R
b1d5f127a6961b11122ac3e19797297e *R/Rphenograph.R
8bd7228a638bd89aa3596f6c09cad156 *R/cluster_analysis.R
6a5fa130a917a2c0ee31dedb6c8f7859 *R/clustering.R
77f5a1baaa8988f3304a33758023c20c *R/differential_gene_expression.R
232a31788bc786d7f67c2981dd77ab7c *R/initialize.R
bf9b462954e3922214ec3efe8439000b *R/plot.R
d02646ffde45079cbd6ebcb4c02be090 *R/preprocess.R
557832771678c10dae42897aa99386ee *R/read_data.R
e158b34c11771c8882f205c8089f6b6c *R/simiarlity.R
4151172770734ab56e8b0f70ce767def *R/sysdata.rda
cfc73995dcba53c510ade0e76c4f87df *R/tSNE.R
8ff46b308bdf073224cb148f27c3790d *R/utils.R
176d909e1e979081a33e2f0aa535485f *README.md
9a230b995118ae1de37974d3aebba1cb *build/vignette.rds
2b396400b0d3f1b9ed86dae4484f90aa *inst/doc/lcmv.R
f813fb2e6f271be9f0cca19b45b7eacc *inst/doc/lcmv.Rmd
016008def977b2c51eddadf799184801 *inst/doc/lcmv.html
f6751a342faf0d5c34e5469b26fd67ea *inst/extdata/LCMV1_small.txt
a86c3594123066196b766eb90413b31a *inst/extdata/LCMV2_small.txt
d5ea3f7fb4c84c4832e65add30bb883d *man/PCA.Rd
602f55a5b21f02081bcb03edda372ca5 *man/Rphenograph.Rd
597d0d211702d8c38b1dc9a78851eed9 *man/add.confounder.variables.Rd
037c9bbdb7e6c23761682d77d1e7d102 *man/assess.cluster.similarity.Rd
f93f9e61268f221ae3da805dc43914d2 *man/cell.cycle.score.Rd
a4f7a8aa2e57a70d2d284b2598280812 *man/cluster.analysis.Rd
c15ee59a5816560aa439c9402ba43999 *man/controlled.mean.score.Rd
416ee12f03ff5cfffd6764009643ca30 *man/download_LCMV.Rd
320d53e8b58d6067c755079009e5b0cd *man/filter_cluster_data.Rd
995a6a3db6fe8278350dfdb4e1716366 *man/find_neighbors.Rd
07b6ea2acb47081f1680c2446b0ea8dc *man/get.cluster.names.Rd
dc694663353a501323d876d692f58234 *man/get.robust.cluster.similarity.Rd
dca8b9894b5b3c0f3169fc67f1afc769 *man/get.robust.markers.Rd
ea3dead75e5ae742897d6d3f3e9cdb14 *man/get.variable.genes.Rd
071c85f8fd7b223f899f9f988105cc9d *man/initialize.project.Rd
a09bb753b840feb4fd005e44046052ba *man/mitochondrial.score.Rd
44c68d5a56a3255ad7933aaffc851a86 *man/plot_PCA.Rd
4e76eb980c2d15fac376ab6859e1e6f5 *man/plot_contour_overlay_tSNE.Rd
67780d9e316273a24331b8ad3a6ae418 *man/plot_pair_scatter.Rd
f8dbec8d919e33477e98fe8a1648cd33 *man/plot_simple_heatmap.Rd
1381d284d78a8ca72b4871fd40124cb4 *man/read.data.Rd
73a277f4e93809a7a4455dbb6fa2933b *man/read.preclustered.datasets.Rd
10ed61c837f488dbc0ee3580ae11b299 *man/read_10x_data.Rd
260606eb5f62c2d92402f490f6ef781b *man/ribosomal.score.Rd
b7043b3eed6486502daa9775c076a10e *man/run_tSNE.Rd
1aaecab00d457235fd4b8967e714f22b *man/setup_LCMV_example.Rd
dbeac1d0ae30821953227d3f20fc8d6c *man/setup_pooled_env.Rd
9d2ee7841fef4e27a1bd6e7cc0a55d9e *man/summarize.Rd
74075466a67722501bd5558c908eebc7 *man/visualize.cluster.cors.heatmaps.Rd
34f943918376314b36e90bbcf4e34be5 *man/visualize.cluster.similarity.stats.Rd
b30e34ff8af8d721fea6f8e6bad7a5bd *src/RcppExports.cpp
6e8da9fb4cd35c711d4086902a931e05 *src/jaccard_coeff.cpp
b87d0bc751cd15b89b9540d6981f94ee *tests/testthat.R
9dab484a2f59841fc22006f7a5936c29 *tests/testthat/test-clustering.R
24d43c8f3bbfed9ddf03b4a6aa068c16 *tests/testthat/test-get_dist.R
10c2b5face138a9636b257e45a7ac162 *tests/testthat/test-preprocessing.R
8e35daf46716de2439eee44308cea3d3 *vignettes/figs/CD4.contour.tSNE.png
93c7cf8273399e849591eba51cb1f136 *vignettes/figs/CD8.contour.tSNE.png
b38f419a9219971274c80bf3cee6c3c3 *vignettes/figs/Clustering.modularity.png
70c49764bb3971957cb993d23e286a52 *vignettes/figs/LCMV1_LCMV2_similarity.png
151283c7201ddc81b897f94628c64780 *vignettes/figs/PC1_heatmap.png
8628ece91a0daf237457ac076fbbdacb *vignettes/figs/PC2_heatmap.png
064ab3a617fedf41b00761fb24e738c3 *vignettes/figs/PCA.png
a0ef6840124e9a628a3bbd139c1f58ef *vignettes/figs/cluster.size.png
05f3d431d08a99bdb6a4531f80d4861c *vignettes/figs/contour.plot.png
dfabc658ac3c5d73c87530b11b7f810d *vignettes/figs/cor_FC.png
706590925532390fa53b28035397b957 *vignettes/figs/diff.genes.png
0ff23b871620022baa0b58a9b7380b1d *vignettes/figs/post_stats.png
a11e10d18fbfa2c176bc0a08704fcfa6 *vignettes/figs/pre_stats.png
2293866a2dd87873dfa75124f63a502d *vignettes/figs/robust.diff.detection.png
1270b2416f1a8202beee311c0673c9b6 *vignettes/figs/rotation.png
d3d983839318bdbcfb4d65242585b1cf *vignettes/figs/tsne.png
40abd9aba370305702b1f47ac9498644 *vignettes/figs/violin.png
f813fb2e6f271be9f0cca19b45b7eacc *vignettes/lcmv.Rmd
