export(
	read.abfreq,
	read.acgt,
	gc.norm,
	gc.sample.stats,
	windowValues,
	get.ci,
	mutation.table,
  find.breaks,
  segment.breaks,
	mufreq.bayes,
	baf.bayes,
	mufreq.model.fit,
	baf.model.fit,
  cp.plot,
  cp.plot.contours,
	plotWindows,
	chromosome.view,
  genome.view,
	theoretical.depth.ratio,
	theoretical.mufreq,
	types.matrix,
	model.points,
	theoretical.baf,
  sequenza.fit,
  sequenza.extract
)


