1a99555cc3d8c672973906e088d4611e *DESCRIPTION
d0e4d79729afc25282c3f3978a23c582 *NAMESPACE
2a04eb131fb03cab06814b5d61e75c43 *NEWS.md
5a8958d6dd16c896a02cc193d0ddd7be *R/Baseline.R
fcdd60f308cb0cdde047f1ef7d8d3466 *R/Core.R
337075b1a597e131ba3e46e6ca71a974 *R/DistToNearest.R
2786262c0b70210d8d2129fe25f74a4a *R/MutationDefinitions.R
bc8b9308a4b71f3e90dbab6e92d9bd95 *R/MutationProfiling.R
8ed469f7dc80966c048fdf9f4262fdcc *R/RegionDefinitions.R
5a52392cfaa552da4edfc1f2f4db194c *R/TargetingModels.R
b87d4e4a71d929672ac15e2ce6a44a66 *R/shazam.R
9ae1068d1c679ee9833dc1f3756a2294 *R/sysdata.rda
0523be5aa7ccef234a8134ce4524e9db *README.md
a7f2e52201eadd50d5c8e37707109a7e *build/vignette.rds
e7e3fb96f13ebe5ff7f30a204c44f112 *data/CHARGE_MUTATIONS.rda
e65939ed96f62bdb7e81cd4198ad0274 *data/HS1FDistance.rda
6d2899f1e9231832032bd64b8b81f4e8 *data/HS5FModel.rda
7d621c815a2cf4be20eaa0354d77501a *data/HYDROPATHY_MUTATIONS.rda
6cd4e0a3cac26a23b87b459ee499bde0 *data/IMGT_V.rda
bdc040cf783424c715d93934056ae6c7 *data/IMGT_V_BY_REGIONS.rda
0acaae0d5edf2a48843f3e1e99ea1064 *data/IMGT_V_BY_REGIONS_NO_CDR3.rda
eb273b0487409b94b9b36cd416e11058 *data/IMGT_V_NO_CDR3.rda
fbc34f3a4a8f7f3b61f327f545df5a46 *data/InfluenzaDb.rda
bcb84fe108cee3bf414ceda1ef5413aa *data/M1NDistance.rda
5a4160145b4bba0f76066726274c8cf6 *data/POLARITY_MUTATIONS.rda
746a059bbfafbe9d2447f0f7998be256 *data/U5NModel.rda
702a4dcd119766fc1e130f4bc3f3a660 *inst/CITATION
22887162bee929ca16c54106891db6db *inst/doc/Baseline-Vignette.R
da71b3ea56cbbb4c37642586c3286d58 *inst/doc/Baseline-Vignette.Rmd
afda6b992762c35c72a449be0a7e4c6c *inst/doc/Baseline-Vignette.pdf
7f42f51481c349c4dc640d3b0dedad34 *inst/doc/DistToNearest-Vignette.R
a453bfeaf22425bdc88c3a2c6c745749 *inst/doc/DistToNearest-Vignette.Rmd
86ad9e841efb3c5be3b5c25e9b1420f8 *inst/doc/DistToNearest-Vignette.pdf
d310a4364bd5f4ee01872c42028362bc *inst/doc/Targeting-Vignette.R
1183ba4f17c6fe4dab4b0ac368507022 *inst/doc/Targeting-Vignette.Rmd
96853b1ffc904de0dce211b145a1438e *inst/doc/Targeting-Vignette.pdf
8deff3ed730d812f127e54d43f0eb036 *man/Baseline-class.Rd
e7a3661e4111e710a9c11db92baf7b8e *man/HS1FDistance.Rd
caa7b245beba8dee2240be2dd315e976 *man/HS5FModel.Rd
c2c18528b5e6f4b168eba158fffc056e *man/IMGT_SCHEMES.Rd
e5f5df6a7bfda36aa1163bed631c410a *man/InfluenzaDb.Rd
989a4850ca6bd051b233d0744f200df5 *man/M1NDistance.Rd
a3599a1e5fb5f2eacf5942e9a7dd7ffd *man/MUTATION_SCHEMES.Rd
6e5846811b1462345dca37808e73aac3 *man/MutationDefinition-class.Rd
5df89b7d90c48c16a64b9c4a187e1d3b *man/RegionDefinition-class.Rd
eb122ff0888417b6639374c925720c6b *man/TargetingModel-class.Rd
9dd9ef42aec48f3a8cf4ca904a407886 *man/U5NModel.Rd
4d2997189705b2962f14f64745c79464 *man/calcBaseline.Rd
cdb5ac1e062d43a26173927abcd9d92e *man/calcDBExpectedMutations.Rd
97b518bf260e5b02533a2f822b46e516 *man/calcDBObservedMutations.Rd
aceee5b07a970e37ea68f187b3f806cc *man/calcExpectedMutations.Rd
c33ba1f0d05392aae92196b6f13ab778 *man/calcObservedMutations.Rd
6e7ff41bbac5e9b277a141bc11ad97fe *man/calcTargetingDistance.Rd
caedf9b3c2748a62a03736df34d730ce *man/clearConsole.Rd
d8f8ec099e2bec968e7336c4b2489435 *man/collapseByClone.Rd
69058fe26fecf704caed8edcd454f4ce *man/createBaseline.Rd
63ccf66901488821a189e8b0b651db4c *man/createMutabilityMatrix.Rd
0df7a1394e777247c8c059518035802b *man/createMutationDefinition.Rd
2feedbd2378c7806bf7bdd53f2027c4c *man/createRegionDefinition.Rd
09c81babf3c5e8386b5791be39979501 *man/createSubstitutionMatrix.Rd
0e6801d7e3976c40e232070700f306bf *man/createTargetingMatrix.Rd
aa92ebd21d866d31299a060bc2d5f6c7 *man/createTargetingModel.Rd
bf0387383029b2c49dbc7321d51e0c82 *man/distToNearest.Rd
a77489f2b5bfc61fcc86ed00a3eebe6c *man/extendMutabilityMatrix.Rd
bb3f738a62eeb5c048702ad7653ccd2f *man/extendSubstitutionMatrix.Rd
9cb2205ace02ff28beb659196df6035e *man/getBaselineStats.Rd
4169cb0439df4412f181dbab17d1f978 *man/getPlatform.Rd
b474918ab362b8bf10dec25299667278 *man/getnproc.Rd
59d3f77e423f30fbf39496697718a974 *man/groupBaseline.Rd
ee3faa636fe1af3d8cad0dfd29e59965 *man/plotBaselineDensity.Rd
c15a32ae4fb03bd9277ec88a83a8437a *man/plotBaselineSummary.Rd
6bf2ccd72f4c1717c94b0d5ed0583d0c *man/plotMutability.Rd
66bd3026c3988f38e30707887ae3454a *man/shazam.Rd
236ec75adfcb665aed8550224ea24106 *man/summarizeBaseline.Rd
9bad38099bda2abf1e2d6d64b1872405 *man/writeTargetingDistance.Rd
da71b3ea56cbbb4c37642586c3286d58 *vignettes/Baseline-Vignette.Rmd
a453bfeaf22425bdc88c3a2c6c745749 *vignettes/DistToNearest-Vignette.Rmd
1183ba4f17c6fe4dab4b0ac368507022 *vignettes/Targeting-Vignette.Rmd
