useDynLib(BAMMtools)
exportPattern(".+")

import(ape)

S3method(as.bammdata, credibleshiftset)
S3method(print, bammdata)
S3method(print, branchprior)
S3method(print, credibleshiftset)
S3method(summary, bammdata)
S3method(summary, branchprior)
S3method(summary, credibleshiftset)
S3method(plot, bammdata)
S3method(plot, bammshifts)
S3method(plot, credibleshiftset)
S3method(as.phylo, bammdata)
S3method(as.phylo, branchprior)

importFrom("grDevices", "col2rgb", "colorRampPalette", "dev.off", "gray", "pdf", "rgb", "terrain.colors")
importFrom("graphics", "axTicks", "axis", "box", "grconvertX", "grconvertY", "image", "layout", "lines", "locator", "mtext", "par", "plot", "plot.new", "plot.window", "points", "polygon", "rect", "segments", "text")
importFrom("methods", "hasArg")
importFrom("stats", "cor.test", "dbinom", "density", "dnorm", "kruskal.test", "loess", "median", "quantile", "reorder", "sd", "wilcox.test")
importFrom("utils", "lsf.str", "read.csv", "read.table", "tail", "write.csv", "write.table")
