6e10479b1249fb51464516d038b136c1 *DESCRIPTION
a287ef9e3924d0860a4aff4c8956e946 *INSTALL
0d25765d4510a993a4d9b8bc42143a7b *NAMESPACE
46cf369785b3a783b95c1dd92fbec0c6 *NEWS
965a47c725829fe5143b9867b0796d43 *R/SeqFeatR_GUI.R
031b9504d1c182859a5bb68679ffd445 *R/assocpair.R
0517ae3a9de37e07b52567a2e04eb85f *R/assocpairfeat.R
fd07167666bad8d4a33e4d84eb313775 *R/assocpoint.R
8ba7338c5953613e1fd886413aa3196b *R/assocpointpair.R
6cb2494a1ab0649e886a02d94a0e805e *R/assoctuple.R
209400ebf91cc97893be45c9d7d3f612 *R/comparewithancestral.R
65dcf7b9730d431c44b5b2089fc428c8 *R/foundereffectfinder.R
d7396b94c804f4ba27f799db94081674 *R/getfreqs.R
5aa549591025604e20784737e72e9ba1 *R/orPlot.R
15265a2dafbf2837b6c5c3c9f95ccc79 *R/q-values.R
1121c063b88c38f24528e1f0d389eea8 *R/rewritetuple.R
ebbde229defca575a9f060c3dd18f32c *R/tartan.R
60131169f24367f6f381b7376098ee5d *R/visualizepair.R
5c863ab5b1fe917775d624a362997904 *R/visualizepairfeat.R
565c4e08e54b0d1f31fb1e278a8ed723 *R/volcanoplot.R
0e3ae6f710d435540437feb802c30d5d *build/vignette.rds
14be21d1bb37424d84f6c7d96ece206b *inst/doc/SeqFeatR_tutorial.Rnw
2fc724eae7ab7e16cbcac0fd0e5916ff *inst/doc/SeqFeatR_tutorial.pdf
99cc6ea7c4db7a2d5db6670e3d4cc6fa *inst/extdata/Example_Consensus_aa.fasta
a0caf81f79a709afac8a5bc071227635 *inst/extdata/Example_Consensus_nt.fasta
ec8d7421e859db84f1d4d3f758020f5b *inst/extdata/Example_HLA_binding_motifs_aa.csv
64adc3599ef6aab4f5789107b0bc7391 *inst/extdata/Example_HLA_binding_motifs_nt.csv
dd18d0bafbb892c70befd7bd249f6df8 *inst/extdata/Example_aa.fasta
9b315b8d74e837681126857379a8bd9e *inst/extdata/Example_epitopes_aa.csv
b12b0f966e203e9d73df3ed2e449ebd2 *inst/extdata/Example_epitopes_nt.csv
1612679a3e50e0e03528b24a7aab8205 *inst/extdata/Example_nt.fasta
200e0b31ae8536e2672cd380ba2e6fc2 *inst/extdata/Example_reference_aa.fasta
e054ec56c225ad1bbf6e2dff5fb1c97c *inst/extdata/Example_reference_nt.fasta
86eb2fbe247820c3fd4e12d7ae53c963 *inst/extdata/Example_tree.nh
5884e85d08ec92d5203d284a1495e8b4 *inst/extdata/assocpair_results.csv
0135a4fbe64665209a06da0c7121a94b *inst/extdata/assocpairfeat_results.csv
b3fc69e4cc4d5555f225f769e71a5548 *inst/extdata/assocpoint_results.csv
463eb92ea3429d3a8820a2a6ae4d6313 *inst/extdata/assocpoint_results_nt.csv
3f131e4b300c9f82a9c5e04b5668effb *inst/extdata/assoctuple_result.csv
88016e43a5cc6d74617b700a5f67720f *inst/extdata/config.cfg
3b93024ab68219acb33ef7c4ee59a409 *inst/extdata/shared_mutations_result_for_tartan.csv
eebec33a4d07ca8dc144be1db0ee2770 *man/SeqFeatR-package.Rd
4f992fa3bf76491a71b5707df547605f *man/SeqFeatR_GUI.Rd
18452ebd5cd713e26e81964efd175878 *man/assocpair.Rd
6cd7229dec387ce09bdc67f899b492f7 *man/assocpairfeat.Rd
dd6f968cc242471a2e78466dc9028f4b *man/assocpoint.Rd
d82115eccda9a379400d50300fa0100c *man/assocpointpair.Rd
303de7059ae2e5c10746df57092e54e3 *man/assoctuple.Rd
30a19fa87c92f07059f80780d61f050c *man/comparewithancestral.Rd
e632dbe69223f950298eace58319e457 *man/foundereffectfinder.Rd
95c0efb38d5fc9f9e80bc28a0ad0d3ce *man/getfreqs.Rd
a23d5d73af80b97bbd70fc353f2f5117 *man/orPlot.Rd
2885eceb884805da53c7fb2068785f4c *man/q-values.Rd
5710cac1c01e2c3d2eedbcfb731f2299 *man/rewritetuple.Rd
90383125f85f2abd5a659e3eb7adf29a *man/tartan.Rd
26751603852ecb5f87034c9449b0f766 *man/visualizepair.Rd
30e4dd966e5faf0d0ceed195b0e44db2 *man/visualizepairfeat.Rd
9e53dbc188af321b90e82ff22026ca11 *man/volcanoplot.Rd
ff9ef425ffd7e354149fb94ac15ba246 *vignettes/Example_HLA_position.png
6a1a1faf51f7846b368be00fe74d43a4 *vignettes/OR_new.pdf
20db91d0dd83845680ba643a65941d93 *vignettes/OR_new.pdf_tex
14be21d1bb37424d84f6c7d96ece206b *vignettes/SeqFeatR_tutorial.Rnw
8f2a812517aeee0856307a25cb4807a0 *vignettes/log.pdf
32d5a4c8765e624bbf6cea45032b7851 *vignettes/log.pdf_tex
54f324abca0883d2f593baba11cba17b *vignettes/screenshotHLA.png
