0fc0297e227d8c1ae61bfcbe85681d45 *CHANGELOG
01feec8d81aded4e3794063619259298 *DESCRIPTION
6637381620badf3b26da62159667b19a *NAMESPACE
ce8c927cb0e39faf8fadad92ffd132ac *R/aaprop.R
d328f81009544d70d5f39ebf9381c45c *R/add_remove_ngrams.R
67445e8e8e119f93f987e0df6c1eacff *R/biogram.R
fe124c0db14a5220c8aeab4c8eb818c5 *R/calc_ed.R
ec26af5e33c7d187d532d3e7a42158c7 *R/calc_si.R
c6129ff104e7efc6e27cbbc63624768b *R/chi_square.R
0e81edb192825d16e073c3b19d2155bf *R/cluster_reg_exp.R
9a4b770df9d4663f0be6e29160d07ec9 *R/construct_ngrams.R
c6a191873aecc0f7680deb0638dbdb9e *R/count_multigrams.R
b3fd797a87cfad79c4a123f8b9775a5c *R/count_ngrams.R
b3e03e5f49806af8294cd2b8407410dc *R/count_specified.R
bd7163a80da0e8ebf526a6c4661ac5f3 *R/create_encoding.R
7c768401670e0349758615703e83eb3b *R/criterion_distribution.R
51eb2f88a5d1de985a4232b0ca5ac58b *R/criterions.R
8c20fd8ac889b4e27b77880f8198f783 *R/data_manipulation.R
66efc2ef77fd38770a2151621d5e05ef *R/degenerate.R
a50e7b0947ce12f1b751f1040caa8b04 *R/distr_crit.R
5eba88231c79e95b45ee3c6c763966c8 *R/feature_test_class.R
5f5e37d495650122a2d96391d5630b18 *R/generate_encodings_dist_1.r
eb1585ad50f213e23e477313a6620659 *R/generate_sequence.R
58af741407f2790fa9a935a027edf692 *R/human_cleave.R
ee725650c466a5824e7ba65c7526880b *R/indices_and_positions.R
e2d991288a4e0f44e1e292444fd653df *R/information_gain.R
610e06aa931dc7a1084fca9eb1bfb10b *R/is_ngram.R
864f14747031ffe0aa4379e3036029d4 *R/kl_divergence.R
6c23b8e99cf556a38410ee298e5947e8 *R/ngram_coding.R
9a39a0fd2e9edbbab69d35db659a8f13 *R/ngrams.R
1f37a28fef92834e883f7f2e9957f99b *R/position_ngrams.R
5664419f18deb942bec401bf0fe18e82 *R/read_fasta.R
13004c1d964b6f01810c72cbc0d865dd *R/regenerate.R
3949c7d4fb75f1065bd816890d856a36 *R/region.R
9ed23062dbe358e9b6c410251e0f7a7f *R/seq2matrix.R
c4b18d407b94cf175097d13e7e05bede *R/simplify.R
9d1f2771cca56dfb61f2e637ef0475eb *R/table_ngrams.R
263ad73ed4d9180db44fb3b84575d52f *R/test_features.R
1dde10d0ba2abba014e26e43aa925eda *R/utilities.R
42131fb12b1ef22af999f8a9cdf8a9a5 *R/write_enc.R
df913985f5627a1c04c063c671f0985b *README.md
39274b1320162ce9f9d6266577d02264 *build/vignette.rds
57887a5e0b2bbba8ef700c2990fa754e *data/aaprop.rda
150c03e87c6fb10381ce88f51795487a *data/human_cleave.rda
91453f4ba192ba97d965f622c4621cc6 *inst/CITATION
104cc85adf12ff7390a8c7b627cd5929 *inst/doc/overview.R
e7a27885104d42830471a4486edd4422 *inst/doc/overview.Rmd
a959e83123e3955831178708798979eb *inst/doc/overview.html
d5375e460bb0d8a4e6a5d8dcaef8215d *man/aaprop.Rd
8467997b7aaf3260cea352b16c338c66 *man/add_1grams.Rd
4c93b177c6305f5bf9f048dd30c13b84 *man/as.data.frame.feature_test.Rd
78f3c73f063663bc2337d708a389ee0c *man/binarize.Rd
9f38fedcadc4c6b9d584a5ccaa367695 *man/biogram-package.Rd
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0b9ee06f1f3307fc7a1bc6ff0e43c915 *man/calc_cs.Rd
504ec0e67f67f23f78e5abdc844cace8 *man/calc_ed.Rd
d462e1279ae4931dd4c2a7fd33cc9206 *man/calc_ig.Rd
d902d3ac8a252df63255c9349aab7478 *man/calc_kl.Rd
f5688fcf1b8adb68b20d6d01dce1cbaf *man/calc_pi.Rd
476956a67ce974972258fe3a52aa1aff *man/calc_si.Rd
85930b8f22dc2bb6f0bce5afebc7ef16 *man/cluster_reg_exp.Rd
5ef96e31dc6de8ff3e11e1e0449f092d *man/code_ngrams.Rd
83aed5de648afe614d509f38d6d5bb12 *man/construct_ngrams.Rd
622a231e9dddddb4f15665c68fcaabca *man/count_multigrams.Rd
3a85f4231cb708ad98a1cb1383532d4b *man/count_ngrams.Rd
4d915e7dd46584df98333144768be1b4 *man/count_specified.Rd
bb6fc5d72136738c63745c05365fabac *man/count_total.Rd
149d86290f2b604fd61b81f20c3f9656 *man/create_encoding.Rd
93676d1534f5deb2ac09e04135f67ec6 *man/create_feature_target.Rd
225d4f1f290a01d689cbf6c0e6f1b975 *man/create_ngrams.Rd
03ef81b25b8b9f7386ce8e86eadaa3f1 *man/criterion_distribution.Rd
0ce40bdfd39ddb8cb3f46f3999c5e118 *man/cut.feature_test.Rd
edb344b0e4e43a84b89384c4a0697f71 *man/decode_ngrams.Rd
1d93f5b797441c9e024e42478a943f80 *man/degenerate.Rd
9304686f7f70f418b76021ba4aee526b *man/distr_crit.Rd
6fc736daba1c3e0b473bede2be4eae42 *man/encoding2df.Rd
c5032229d428cb8690437c54d391f992 *man/fast_crosstable.Rd
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01e3686211e2ad0df2c201ed7f9126ff *man/full2simple.Rd
5ce8025247b8b09c8ba597556960fcf4 *man/gap_ngrams.Rd
e32df482d7ff4cb73b4920e9fc9abd7b *man/generate_sequence.Rd
cf311438f27e5189b318a34f10b0f5aa *man/generate_single_region.Rd
f7b1693655c6bf23f98f279320d3bc8d *man/generate_single_unigram.Rd
04aeb8e14899b04fad86a18125a001fd *man/generate_unigrams.Rd
92e992dfa1d15bf0b54a8aca1247a476 *man/get_ngrams_ind.Rd
81ae14a83bcc58b23f01b1e318954aba *man/human_cleave.Rd
adf55e65bcc2228f1d106b94fdce83ae *man/is_ngram.Rd
45053d0e3f33097c2a331a0afe7f3393 *man/l2n.Rd
8b3385dba29de9a4f3b056d888f796d7 *man/list2matrix.Rd
f2abf126783a791a1f9acd4ccca4200c *man/n2l.Rd
050dbb51cbd1b35e93af5d8c1462389c *man/ngrams2df.Rd
d135e3ab1296f91131f2556fab6f349e *man/plot.criterion_distribution.Rd
0a0647f96951494c936594f532ab25f6 *man/position_ngrams.Rd
2811cc9594ca340aa0e87776f00c2715 *man/print.feature_test.Rd
749cf20964782713cd7b27fb558d218d *man/read_fasta.Rd
38047ee129e1e40fcd00c09934d31f9e *man/regenerate.Rd
f4afb326d9eb19df315e80587491f9de *man/regional_param.Rd
3700bf209c263c97b2389ef34955f4c8 *man/seq2ngrams.Rd
cf8daab538855116ac3b53eaae98e1f9 *man/simple2full.Rd
0e1abed532136ccc774f26d2494dd8d3 *man/summary.feature_test.Rd
4fea2bfe0ccb268b948b3da484dbf24a *man/table_ngrams.Rd
3c8e6da613d2378aedce88a781e307c6 *man/test_features.Rd
9c2535a339c869a191dcbb360798b2b3 *man/validate_encoding.Rd
7e244c28f5a7eae9ffea31fedf957c5c *man/write_encoding.Rd
8aa6f0e52b5d77d8b2d174f5c47c6efc *man/write_fasta.Rd
9219f62c873eacae83631faf4b87a3b2 *tests/test-all.R
372c586447c913795627fb30b6830fd2 *tests/testthat/test_calc_ed.R
52155181ef90542ee5d207b6ee1cc913 *tests/testthat/test_count_ngrams.R
7735b8dfcd13482669b265d3316e6e8d *tests/testthat/test_create_ngrams.R
6c8102d09dbf3b8df2006241e367c645 *tests/testthat/test_crosstable.R
2a6fa6e77eb8252ac0cb91816cd23948 *tests/testthat/test_generate_encodings_dist_1.r
6d48d3a9d68ceb326a787119ed4b0d03 *tests/testthat/test_get_ngrams_pos.R
5ec673d6c7f1daf7fd77a35aeef449e8 *tests/testthat/test_is_ngram.R
d27861ca5a300b7e908474ce2e075388 *tests/testthat/test_position_ngrams.R
5f7deb2472ac6af0e0e71385d801f97c *tests/testthat/test_quipt_consistency.R
2f64f1ff0accd809e5d4500ad6eb144b *tests/testthat/test_seq2grams.R
be46405252c33695aec4eea3df322482 *tests/testthat/test_table_ngrams.R
0d0b17f28346b493659a02bb617e915d *vignettes/biogram_pub.bib
e7a27885104d42830471a4486edd4422 *vignettes/overview.Rmd
