9403b9af4754a24e300f762eee9fc906 *DESCRIPTION
32f1d870e1871becd2b72ae5e82e8255 *NAMESPACE
8bf91e1cff399d42a5102342091f855d *R/RcppExports.R
215eba877cbe44185ce2b2d3037e846f *R/dnaManipulate.R
5ed012880c0c60c5a533bbee55f76135 *R/external.R
84aa7dc947b191963bc47182ce44dacf *R/fasta.R
8e3dbca284144f2ef6f7387ed04db3d7 *R/fastq.R
b05fdce2b2e54eb505ea1f3e244695b3 *R/gff.R
45b31d1b54070e4ac3ef5049bd064b4f *R/microseq-package.R
539a24abbcf3c7052766730243e95303 *R/multialign.R
a393eb33c56766186d682c5c01c1e1fc *R/orfs.R
e1d9deda67d179f7d0b41536599c4c1c *R/utilityfun.R
06fb8557337079072daf85bf88ea9175 *build/vignette.rds
b2ef10b9ecdbfaf8d2e39fb65deb777f *inst/doc/vignette.R
f033f83be771cb6ac156d2454f53e3de *inst/doc/vignette.Rnw
7d221bc40aa8133d5fdd41bf090cfccb *inst/doc/vignette.pdf
af1e142fcd921434271b775104402eba *inst/extdata/16S.fasta
f67702a09be65b9703a89f10309b951e *inst/extdata/small.faa
de6f80cfe8dbbdf1728facd546bc8c5b *inst/extdata/small.fastq.gz
e58d1eee8cf80f5d4b02a0ff22678002 *inst/extdata/small.ffn
0258dbb6ee28611040e0fb9078a36319 *inst/extdata/small.fna
fc701eae38ac1319e1f4939caf74b21b *inst/extdata/small.gff
d8c9ff71f889b580a9c6d4adeb291eb1 *inst/extdata/small.msa
fa3c12881e60d2d33376c2c7d19425e3 *man/backTranslate.Rd
20fab9ff48d8919aa5f5c92cc59dc10c *man/findGenes.Rd
05ad1b896c9ee632fe93f574364b954c *man/findOrfs.Rd
ee6888748d2e897e8bfa0fd8f9a40b44 *man/findrRNA.Rd
0eb32e2d481a49039c0f67e1651290f5 *man/gff2fasta.Rd
ac3983e1f58d12705d3a1f7b4413b675 *man/gregexpr.Rd
2279a6cd441d716c99c563a0f3698d1f *man/iupac2regex.Rd
4e65a38726bc90840714fa2a09d4585e *man/lorfs.Rd
3070556d0b65d6f5b96295939b56835b *man/microseq-package.Rd
fdece0a8336a67edb60c26c860942ec7 *man/msa2mat.Rd
7ee47dfb3f996141b5bc463c97d2e18d *man/msaTrim.Rd
2fbbf672365e760f54e92a0e3ea56b10 *man/msalign.Rd
95101bb99d77730a55b9093b26460948 *man/muscle.Rd
818d8675d13d934f116045c217aaad50 *man/orfLength.Rd
20b14c2a1173a9e857a9102f29ec64a0 *man/readFasta.Rd
902510e2f87286c0c331b32ad1e4d1b6 *man/readFastq.Rd
a1ef0ffd5a5208b1c365525e6c149abd *man/readGFF.Rd
a82023824bed836ca2445445fbb28bea *man/reverseComplement.Rd
91d85dc47d20ba6811c209fa1b616db8 *man/translate.Rd
9075a342959a68c339744d97fc54dd44 *src/Makevars
453b92a74f147ed25678e3ef7b9d41d9 *src/Makevars.win
5ca63e536e90571549ebc6061a7d6602 *src/ORF_index.cpp
e1ba588dd32c3561faa065784b3178d4 *src/RcppExports.cpp
ba139b8216b1192b8a5a833529a9e606 *src/extractSeq.cpp
5f1a59b6b804b65355e719c2ffee6241 *src/init.c
4b781cb682ffa9f5e2046b0abc5f1db9 *src/read_file.cpp
6ece79a89fa2ff8f7d3dc357cbc8c604 *src/revComp.cpp
ffff2563e65622575148c5c93195b575 *src/translate.cpp
d9363e28b6f1169e802d2339c9ce1506 *vignettes/vignette-concordance.tex
f033f83be771cb6ac156d2454f53e3de *vignettes/vignette.Rnw
