49012325ba4074b787d0618053c54f94 *DESCRIPTION
78ee7a2d24c45dd6fa92d22551005639 *NAMESPACE
332e74331737d3d8c0fb4a5dbd2c69ab *NEWS
db718843face57068ea5d842cccc22e2 *R/clanistic.R
af8212183178e675c8e04cf8501a1462 *R/distSeq.R
a04e6b653cafa791c2d9073b49507da7 *R/fitch.R
f038123b73c35574c40cfddde9a3dd5b *R/networx.R
cd0fcc2ffcceb8517924918e0c07da4c *R/parsimony.R
6ab9499926d67962735739aff09eab88 *R/phyDat.R
a1309cc9d6de5887eea2bdb1581f989d *R/phylo.R
772d3c5dcd42134b162bbf1dfd2f9801 *R/sysdata.rda
6f188413057e6c223953b5fe7d23f336 *R/treeManipulation.R
5dbd97fc9ca17e6c9ef38ad428ee5411 *R/zzz.R
89e290a3cc7435e4f0aa5ccd3a380192 *Thanks
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
4b269c2e640293341b9b1c04d4dd7f4e *data/chloroplast.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
b4d3fa3f40aae3a68846d1f28274e9a0 *inst/CITATION
b429ae0fccba66a176a0666b06ecbe3f *inst/doc/Ancestral.pdf
1d8f50dbb36aadcdf76809fddc300cea *inst/doc/Trees.Rnw
49d1e740c03a2c7580c2f11081e662bd *inst/doc/Trees.pdf
2ba3103cd13457beddcfba7d60c23cf3 *inst/doc/phangorn-specials.Rnw
de1bc5ccf9b68bcee8c71b75aa6b86c0 *inst/doc/phangorn-specials.pdf
fdc1176d0c0f2db3de1c9dfd83d3c070 *inst/extdata/MtZoa.dat
fc090d051ce4f18b937448a254e2764e *inst/extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *inst/extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *inst/extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *inst/extdata/lg.dat
917303a3df098f9137c651de0afa78fa *inst/extdata/mtArt.dat
1cd5e39670b86d32b5fe5c27dcc79648 *inst/extdata/mtREV24.dat
0ca0d0e987fcebf847a876779eddd934 *inst/extdata/mtmam.dat
87fa1533c4dfe7074237cfa2196bcbeb *inst/extdata/wag.dat
ae3847d3a8ba0964e760114a9b56acb4 *man/Ancestors.Rd
bda5669b71de975e1309d909c495b71f *man/Laurasiatherian.Rd
bc55c4fc38cf7210b54fd801c6c678f3 *man/NJ.Rd
e499b3bd5f3315d187531c99bd776d9f *man/SH.test.Rd
6403c950d8f9700d3fe1c847970461ef *man/allTrees.Rd
a1dba092326f955559e005db7ca08651 *man/ancestral.pml.Rd
573f2589e5925533ca28f6c5327bebae *man/as.splits.Rd
c080fc44f1f3101ea84d86b3d4932f17 *man/bab.Rd
5161e487b48f8616403f7bfe182fe3ed *man/bootstrap.pml.Rd
22ad0ef60c2edd8b3d003f170f2fa15a *man/chloroplast.Rd
94d9830e45ba236bcc782c49fa89052f *man/consensusNet.Rd
20f30cceced0e7188e76e70b4c947a32 *man/designTree.Rd
924c4e906042d64ac4fc4907af8c6cf1 *man/dfactorial.Rd
d9f9faa9c4048b99a1c28b76d1f73ea7 *man/dist.hamming.Rd
dbc23facc26a85fbc08711c754894cbb *man/distanceHadamard.Rd
72abceeb247f22b3da6560df0c20468a *man/getClans.Rd
f62c5014070a1478e9dade5992d31c6d *man/hadamard.Rd
0fc6883684d475036889685ed2489d56 *man/lento.Rd
77e0c0a9f38a6457caee9c005a51072e *man/midpoint.Rd
1cfe141fa2121a5cceac9f18a09c0b7d *man/modelTest.Rd
9734364abdb5d0122e1b4850d03b6d18 *man/nni.Rd
5952fe0195b625ce8c9438dccd8e6854 *man/parsimony.Rd
06d3770fff0d07f19393875735cfa004 *man/phangorn-package.Rd
20ab2e9ecabe1d3cae7c499b02e92824 *man/phyDat.Rd
45989e0c54e13280e31db6fbba9e56c3 *man/plot.networx.Rd
d13ee1fdcf6f4a820955380f525c7277 *man/pml.Rd
b0d9d6253249602e80d66bc1b721b6ea *man/pmlCluster.Rd
6e90cc0d0d5a71888c18d90394d25ade *man/pmlMix.Rd
825f7c9871c6e0f549fa9507ac04df7d *man/pmlPart.Rd
18fb589c1c09c9a494098a6d04d3dbad *man/read.aa.Rd
4e058643bd5171e08ef7dff5a3bf9f3e *man/simSeq.Rd
9a50832f0097b8399f83d65b34937f76 *man/splitsNetwork.Rd
6c36eee241785d02e58e26d735f6306b *man/treedist.Rd
64399c9fb7fb25d103c25aa925ab7a10 *man/upgma.Rd
b97649fe8b91a0632a1ded89a6f43125 *man/yeast.Rd
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars
687e658bf267457d88d30a79e179cdfa *src/fitch.c
937f1ff1caa2aa69095483a528e36694 *src/phangorn.c
9608eda76927e9438fa12a63ef8692cd *vignettes/Trees.RData
1d8f50dbb36aadcdf76809fddc300cea *vignettes/Trees.Rnw
6af5f4d4c2e93469cc19d46a97ab5d0f *vignettes/exdna.txt
2ba3103cd13457beddcfba7d60c23cf3 *vignettes/phangorn-specials.Rnw
7fd70773ea52ddf23bf9387657221ea4 *vignettes/phangorn.bib
d3069d1eff9e70bed655b8962bf4ee2b *vignettes/primates.dna
