Package: scoper
Type: Package
Version: 0.1.0
Date: 2018-10-04
Authors@R: c(person("Nima", "Nouri", role=c("aut", "cre"), 
                    email="nima.nouri@yale.edu"),
             person("Jason", "Vander Heiden", role=c("ctb"), 
                    email="jason.vanderheiden@yale.edu"), 
             person("Steven", "Kleinstein", role=c("aut", "cph"), 
                    email="steven.kleinstein@yale.edu"))
Title: Spectral Clustering-Based Method for Identifying B Cell Clones
Description: Provides a computational framework for unsupervised identification B cell clones 
             from adaptive immune receptor repertoire sequencing (AIRR-Seq) datasets. This method 
             is based on spectral clustering of the junction sequences of B cell receptors (BCRs, 
             also referred to as Immunoglobulins, (Igs)) that share the same V gene, J gene and junction length. 
License: CC BY-SA 4.0
URL: https://scoper.readthedocs.io
BugReports: https://bitbucket.org/kleinstein/scoper/issues
LazyData: true
BuildVignettes: true
VignetteBuilder: knitr
Encoding: UTF-8
Depends: R (>= 3.1.2), ggplot2 (>= 2.0.0)
Imports: alakazam (>= 0.2.11), shazam (>= 0.1.10), doParallel, foreach,
        dplyr (>= 0.7.0), stringi, methods, stats, iterators, lazyeval
Suggests: knitr, rmarkdown, testthat
RoxygenNote: 6.1.0
Collate: 'Data.R' 'Scoper.R' 'Functions.R'
NeedsCompilation: no
Packaged: 2018-10-04 20:58:03 UTC; nima
Author: Nima Nouri [aut, cre],
  Jason Vander Heiden [ctb],
  Steven Kleinstein [aut, cph]
Maintainer: Nima Nouri <nima.nouri@yale.edu>
Repository: CRAN
Date/Publication: 2018-10-14 17:00:03 UTC
